XLOC_008578 (si:ch211-137a8.2)


Basic Information

Item Value
gene id XLOC_008578
gene name si:ch211-137a8.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 29024895 ~ 29071870 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017126
GACTGCTCGGGGGCGTGGCTTCGCTTTACCTGTGTCAGCAAGCAGATGCCGTTTGCTGATGCCAGGATGTTAGAAGAGCCTTTACTCAAAGCCAATGGAAACAGCAGAGAAAGAGACGAAGACCGAGAAGAAAAGCCAACATGCGTTGAAATGAACCAAAATGGCCTGTACCTCCAATCCTCAGAGACCTGCTGTCCCACAACAAGCTCTAAaccatatgatgatgatgatgatgacttgAATGAGTTCTCTAATGAGTGGTTGTCCATTGGAGACTTGAGCCCGGATGTTTCCTTCTCCCTCGAGGGCTGCGTCAAGCTGGAGAAAAGGTGGATGCTGTGGCATGAGTTCAAAAAAGATCTTTCTTCCATGGATGAATGGCTTCGGTCGGCTGAGAAGATTGCAGCTTCTCCAAACTCCAGCCATGTGCTGTATAAAACTGCAAAAGACGAGTTAAGAAAATATGAGCATTTGGTGGGCCAGCGGGAGGATTTCGAGAGGCAGAGGGAAGAGATGGCGGTCTGGTTGGCTGATATGGACCTC
>TCONS_00017127
ACCTGTGTCAGGTGACGTTTCAATTTGCTTACAACTCAAAAGTCTGATAGCTGTGCTAAGTCACTCGAAACAGCGAGCTTCTTTTTATCTTACAAACTAACTTCGAGTGGTTTCCGTTTGATGCGTGTTAGCAGCAAAGCATACCTAGCATTTCAAAGCTGATCAGAAGTATTTTAACCCTGAGGATGAAAACTTTTGCACCTGTGTGATTCCTGAAACCTCGAGGGATTCCCTGAAGCAGACAAGTGAAAGCTTGGAGTTACATGTTTGCACCAAGCAGATGCCGTTTGCTGATGCCAGGATGTTAGAAGAGCCTTTACTCAAAGCCAATGGAAACAGCAGAGAAAGAGACGAAGACCGAGAAGAAAAGCCAACATGCGTTGAAATGAACCAAAATGGCCTGTACCTCCAATCCTCAGAGACCTGCTGTCCCACAACAAGCTCTAAaccatatgatgatgatgatgatgacttgAATGAGTTCTCTAATGAGTGGTTGTCCATTGGAGACTTGAGCCCGGATGTTTCCTTCTCCCTCGAGGGCTGCGTCAAGCTGGAGAAAAGGTGGATGCTGTGGCATGAGTTCAAAAAAGATCTTTCTTCCATGGATGAATGGCTTCGGTCGGCTGAGAAGATTGCAGCTTCTCCAAACTCCAGCCATGTGCTGTATAAAACTGCAAAAGACGAGTTAAGAAAATATGAGAACCTGCGCGCTGAGGCCAGGATGCGTTTAACCCAGCTGGACTGTTTGACCCAGAGGAGTCGCGCTCTGCACGGGCTCTTCAGAGGTGCTATGGGCGCGCGACTTGTAGAAATGACCAAAGACTGTGGAGAGCGCTGGGATCAGCTCAGCAACACACTTGAGACTGTGTGCCGCAGGTTAAAGCATTTGGTGGGCCAGCGGGAGGATTTCGAGAGGCAGAGGGAAGAGATGGCGGTCTGGTTGGCTGATATGGACCTCAGGCTGACTGAAGTGGAGCATTTCTCGGGCAAAGACACCTGCTCGAAGATGCACCAGCTTCAGGGCTTTCAGGAGGCAGTTGGAGAGAGCGCAGGTCGACTGAATGATCTGCTCCAGCGAGGAGAAGAGCTGATCCAGAGGAGCGAGCCAGCAGACGCTCAAGCCATCGAGAGCCAGCTTCAGGAGCTCCTGCTTCACTGCACACATGTCTTTCAGGCCCTCGGACGCCTGCACACCCGCCTGCTCAGCATGAGACTGgTGTTTGAGGAGGACTGGGCTCTGTGCTCTCCTGACTCCGGCTGTCCCTCTGAGAGTTTGCTGGAGGACGAGGGCTTCATGGAAAAGATCATGGCTCCTTTTCCTCAGTCCAGTCACGATCAGCTGGTTCTGGAGTGGGACCCTTCAGTGGACATCGGCGGTTCAATCTCTCATGATGACACTGACTCGTCCTCCTTCAGTGCTGCTGCAGGTGTTTTTAGCACAGATGAATCTGCCAAAAATCCCCTGAGGAAGAGAGTCTGCATTAAACAGCCAgGCCATGAGAAGAGCTTAGATCGGGCAGCTCCACCCCAGACGCCAGTGCCAGTCATCAGAGCTGGCAGGCCTCAGTTTGCTGGTCAGTTTCAGACGTCCACACCTGAAATTAGGTCTCCTGAGCTGCTGACTTTTGACCCAGAGCGCATCAGTGCTTGGCTTGGCCAGACGCATCAAGTGTGCACTAAAGCTATCCAGACGGAGCATGATCCACAGCCTCGCTCCAGTTTTTCATCTCTACCATCCGGAAAAGAAGACAAGGAGGAGGAGGGTTTCGAGTACCAGGAGAACGTGCATCATCCCCCGAGACCCACGTGCGCCAACCTTCACTCGTCCCAGTCATGTGACCTCCAGCATCACTTGCAGCAGCGTCACCAAGACCCACAGAGGCAGCAGGAGAGGCTTTGTCTCCCCGACTCATTGGAGGACAACAGCTGTACAAAGTTGAGTCGTGACCTGTGTCAACCGAAGGCCTCTACAGGAAACTCATGGTCATCAAGGATCCTGAGGTTTAAGGGCATTGGAAAGGCCTCAGTGCCACTGCTCATTCTCCTATTTGCCTTCCTGCTTGCTGTGGTGATCTTGTTTCTCCTTTCGCACCACGAAACCCCATGCCACCAGTCCAACACACTGACTCGCTCATTTCACCTGGCCTTGCATTACAATGGACCTCCTCCAACCTGAGGATGACATTACAGTAAGAttttagaaagtaaaataaaCGAGAGATATGTAGGATTGGAAATTGAGAAAGCATGTCTCCTGAAAATGGGCAGTTCTGCTTTATTTGACTTTATGACCTTAAGGCCTTGTCCGCTACATTAAAATATGGTTGGGCTCAAAGCCATCAAAGAATATGCGTGCAAACCAAAGTAACAAGTGCACTTAATTCTGCTCAGACAGTCATTTTCTCACAGCGTCAGAGTAAATCGTATAGAATTGAACGGATTTGACAGCTTTGGAAAGCATCGCTATTTAAAACCGCCTTGTCATGCATGTTTACTTTGACGTTAAGAGATTTGTTGGACAACCAAATATTGTTATGTGTTGAAGGGAgattaatattaatgtaaaaaatagtaGATATTATGAGTGAATGTATGTTTGTGCTATATAgtatttgctttaaaatgtaaaaaagaaaatattgctAGCCATTTTGTAGCTTTCAACGAATTGTTTTTTACATCGAAAATCATTGAACATTTCAACCAGTCACAAAATGTATTTGAACAACCACTGAATTATGCTGTAAtcactacatttttattttttaaaaagggacATTCTGCActgtatttaatttttgcatCAGTCCAAATGAAGAAGACACCTAATCAAGCTTTAAAGTAAATCCTTGTGAACATCAAGGAACCGTTTTTGCACTGTTATCTGTTTTTATATGGCTTCTAAAATAAAAGAGATGAGAGAGAACAA
>TCONS_00017128
GTATTTTAACCCTGAGGATGAAAACTTTTGCACCTGTGTGATTCCTGAAACCTCGAGGGATTCCCTGAAGCAGACAAGTGAAAGCTTGGAGTTACATGTTTGCACATGCCGTTTGCTGATGCCAGGATGTTAGAAGAGCCTTTACTCAAAGCCAATGGAAACAGCAGAGAAAGAGACGAAGACCGAGAAGAAAAGCCAACATGCGTTGAAATGAACCAAAATGGCCTGTACCTCCAATCCTCAGAGACCTGCTGTCCCACAACAAGCTCTAAaccatatgatgatgatgatgatgacttgAATGAGTTCTCTAATGAGTGGTTGTCCATTGGAGACTTGAGCCCGGATGTTTCCTTCTCCCTCGAGGGCTGCGTCAAGCTGGAGAAAAGGTGGATGCTGTGGCATGAGTTCAAAAAAGATCTTTCTTCCATGGATGAATGGCTTCGGTCGGCTGAGAAGATTGCAGCTTCTCCAAACTCCAGCCATGTGCTGTATAAAACTGCAAAAGACGAGTTAAGAAAATATGAGAACCTGCGCGCTGAGGCCAGGATGCGTTTAACCCAGCTGGACTGTTTGACCCAGAGGAGTCGCGCTCTGCACGGGCTCTTCAGAGGTGCTATGGGCGCGCGACTTGTAGAAATGACCAAAGACTGTGGAGAGCGCTGGGATCAGCTCAGCAACACACTTGAGACTGTGTGCCGCA
>TCONS_00017129
CTATGGGCGCGCGACTTGTAGAAATGACCAAAGACTGTGGAGAGCGCTGGGATCAGCTCAGCAACACACTTGAGACTGTGTGCCGCAGGTTAAAGCATTTGGTGGGCCAGCGGGAGGATTTCGAGAGGCAGAGGGAAGAGATGGCGGTCTGGTTGGCTGATATGGACCTCAGGCTGACTGAAGTGGAGCATTTCTCGGGCAAAGACACCTGCTCGAAGATGCACCAGCTTCAGGGCTTTCAGGAGGCAGTTGGAGAGAGCGCAGGTCGACTGAATGATCTGCTCCAGCGAGGAGAAGAGCTGATCCAGAGGAGCGAGCCAGCAGACGCTCAAGCCATCGAGAGCCAGCTTCAGGAGCTCCTGCTTCACTGCACACATGTCTTTCAGGCCCTCGGACGCCTGCACACCCGCCTGCTCAGCATGAGACTGgTGTTTGAGGAGGACTGGGCTCTGTGCTCTCCTGACTCCGGCTGTCCCTCTGAGAGTTTGCTGGAGGACGAGGGCTTCATGGAAAAGATCATGGCTCCTTTTCCTCAGTCCAGTCACGATCAGCTGGTTCTGGAGTGGGACCCTTCAGTGGACATCGGCGGTTCAATCTCTCATGATGACACTGACTCGTCCTCCTTCAGTGCTGCTGCAGGTGTTTTTAGCACAGATGAATCTGCCAAAAATCCCCTGAGGAAGAGAGTCTGCATTAAACAGCCAGTAAGTCCATCTCACAGGTTCTACTGTAATCTGTGTTTAGTTACATTGAAGTACACATTAAAATGTGGACCGCAGTGTCTTGGCCCGTCGTGAATTTGCATACACAGTCAGTCCAggaataaaatgtcattaaagtGCAAATGAAAGG
>TCONS_00017130
TTGTGCCGTTTCCGATTTGACGTCCCTGTTGTAATTTTGATGCGTCTCCCTGTCAGTCTGTGTCTGTGCTAAAAACAGCATCAGGATGTAGACAGTCAGACACAATCACgctctgcctgtgtgtgtgtttttgtgtgtgtgtgtctatgacaGCATTTGGTGGGCCAGCGGGAGGATTTCGAGAGGCAGAGGGAAGAGATGGCGGTCTGGTTGGCTGATATGGACCTCAGGCTGACTGAAGTGGAGCATTTCTCGGGCAAAGACACCTGCTCGAAGATGCACCAGCTTCAGGGCTTTCAGGAGGCAGTTGGAGAGAGCGCAGGTCGACTGAATGATCTGCTCCAGCGAGGAGAAGAGCTGATCCAGAGGAGCGAGCCAGCAGACGCTCAAGCCATCGAGAGCCAGCTTCAGGAGCTCCTGCTTCACTGCACACATGTCTTTCAGGCCCTCGGACGCCTGCACACCCGCCTGCTCAGCATGAGACTGgTGTTTGAGGAGGACTGGGCTCTGTGCTCTCCTGACTCCGGCTGTCCCTCTGAGAGTTTGCTGGAGGACGAGGGCTTCATGGAAAAGATCATGGCTCCTTTTCCTCAGTCCAGTCACGATCAGCTGGTTCTGGAGTGGGACCCTTCAGTGGACATCGGCGGTTCAATCTCTCATGATGACACTGACTCGTCCTCCTTCAGTGCTGCTGCAGGTGTTTTTAGCACAGATGAATCTGCCAAAAATCCCCTGAGGAAGAGAGTCTGCATTAAACAGCCAGTAAGTCCATCTCACAGGTTCTACTGTAATCTGTGTTTAGTTACATTGAAGTACACATTAAA
>TCONS_00017131
AATCATGGAAGAGCTGCTCTCAATTTGGCTCGTTTTCTAATATCCTTGAAAAATGGCCAACAGCCCCCTTAAATCTTGTTTGTGATCGATTTCAAAACGTACAATTTGGTGCTTGTGTTCAGGGATTAAACGTATATATTTGTATTCATCTTGTTTGATCGGAAGGAAAGTTCAGAGTGGATTTGTTTATGGTGTAatctgttgtttgtgtgtgttttggatgCAGTCATCAGAGCTGGCAGGCCTCAGTTTGCTGGTCAGTTTCAGACGTCCACACCTGAAATTAGGTCTCCTGAGCTGCTGACTTTTGACCCAGAGCGCATCAGTGCTTGGCTTGGCCAGACGCATCAAGTGTGCACTAAAGCTATCCAGACGGAGCATGATCCACAGCCTCGCTCCAGTTTTTCATCTCTACCATCCGGAAAAGAAGACAAGGAGGAGGAGGGTTTCGAGTACCAGGAGAACGTGCATCATCCCCCGAGACCCACGTGCGCCAACCTTCACTCGTCCCAGTCATGTGACCTCCAGCATCACTTGCAGCAGCGTCACCAAGACCCACAGAGGCAGCAGGAGAGGCTTTGTCTCCCCGACTCATTGGAGGACAACAGCTGTACAAAGTTGAGTCGTGACCTGTGTCAACCGAAGGCCTCTACAGGAAACTCATGGTCATCAAGGATCCTGAGGTTTAAGGGCATTGGAAAGGCCTCAGTGCCACTGCTCATTCTCCTATTTGCCTTCCTGCTTGCTGTGGTGATCTTGTTTCTCCTTTCGCACCACGAAACCCCATGCCACCAGTCCAACACACTGACTCGCTCATTTCACCTGGCCTTGCATTACAATGGACCTCCTCCAACCTGAGGATGACATTACAGTAAGAttttagaaagtaaaataaaCGAGAGATATGTAGGATTGGAAATTGAGAAAGCATGTCTCCTGAAAATGGGCAGTTCTGCTTTATTTGACTTTATGACCTTAAGGCCTTGTCCGCTACATTAAAATATGGTTGGGCTCAAAGCCATCAAAGAATATGCGTGCAAACCAAAGTAACAAGTGCACTTAATTCT

Function

symbol description
si:ch211-137a8.2 Predicted to be located in membrane and nuclear envelope. Predicted to be integral component of membrane. Predicted to be part of meiotic nuclear membrane microtubule tethering complex. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 76. Orthologous to human SYNE4 (spectrin repeat containing nuclear envelope family member 4).

GO:

id name namespace
GO:0034993 meiotic nuclear membrane microtubule tethering complex cellular_component
GO:0005635 nuclear envelope cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-061103-172 Predicted to be located in membrane and nuclear envelope. Predicted to be integral component of membrane. Predicted to be part of meiotic nuclear membrane microtubule tethering complex. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 76. Orthologous to human SYNE4 (spectrin repeat containing nuclear envelope family member 4).

Ensembl:

ensembl_id ENSDARG00000068926

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017126 False 543 mRNA 0.49 4 29024895 29047606
TCONS_00017127 False 2932 mRNA 0.47 13 29024922 29071870
TCONS_00017128 False 703 mRNA 0.49 4 29025090 29044311
TCONS_00017129 False 852 lncRNA 0.53 5 29044225 29056376
TCONS_00017130 False 824 lncRNA 0.52 4 29047379 29056290
TCONS_00017131 True 1067 lncRNA 0.47 4 29059074 29071326

Neighbor

gene id symbol gene type direction distance location
XLOC_008577 clip3 coding upstream 18706 28989573 ~ 29006189 (+)
XLOC_008576 gipr coding upstream 50775 28940352 ~ 28974120 (+)
XLOC_008575 nova2 coding upstream 258071 28685625 ~ 28766824 (+)
XLOC_008574 BX088540.1 coding upstream 396993 28598647 ~ 28627902 (+)
XLOC_008573 NA coding upstream 473218 28548626 ~ 28551677 (+)
XLOC_008579 si:ch211-137a8.4 coding downstream 14085 29085955 ~ 29091807 (+)
XLOC_008580 capns1b coding downstream 41746 29113616 ~ 29122830 (+)
XLOC_008581 zgc:101731 coding downstream 51161 29123031 ~ 29138266 (+)
XLOC_008582 zgc:113149 coding downstream 68256 29140126 ~ 29152619 (+)
XLOC_008583 BX537104.1 coding downstream 89786 29161656 ~ 29271467 (+)
XLOC_008463 BX663520.1 misc upstream 7772613 21252191 ~ 21252282 (+)
XLOC_008567 NA non-coding upstream 796461 28222431 ~ 28228434 (+)
XLOC_008564 NA non-coding upstream 860928 28160893 ~ 28163967 (+)
XLOC_008561 NA non-coding upstream 1164876 27857395 ~ 27860019 (+)
XLOC_008587 NA non-coding downstream 481173 29553043 ~ 29643810 (+)
XLOC_008588 NA non-coding downstream 523714 29595584 ~ 29597117 (+)
XLOC_008591 dre-mir-99-1 non-coding downstream 723713 29795583 ~ 29795666 (+)
XLOC_008592 dre-let-7c-1 non-coding downstream 723953 29795823 ~ 29795929 (+)

Expression


Co-expression Network