G139939


Basic Information

Item Value
gene id G139939
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3112268 ~ 3114186 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU159023
CGCATGTTTAATTCTGTATTTAATGTCCAGTGATCAATACAAATTAATTGGAATATTGTAATGTAAACAAGAGATTGCTCAAATTAATTCTGATTTTCATTACACTGGAAATAGAAGGTCTGACACATTGCATTGTGGGATACAGTATGTCATGCAGGGTTATTTCTGTGCTTACAGAAAATGAGCATGCTTACATTACAGAAACTACATTTTTGCAGACTGCATGAGATCTTACGTGCCCATAGTTTAAGCAACATGACTAACAATATTCTGGATCTGACTGAATAAAGAAATCAAGACAATGAGATTTTAAATAATTCATTTACACAGTGCAATTGTTTAAAAACTGTTGATAGTCACTATTTAGGCATAGGGTCAGGAAATATACTAATTAAAAATCAATTATTTAAGAGTCATCAGTTAATATGGCCTTTACACAATACATACTTACAGCTTCAGGTTTTTTTTGGCACCATTCACACAGAAATTCCTGAAACACAACTAAGACTTTTCAAACAACCAAAAAGTTGACAAGACTGAACAGGTCGAATAAAATCAATCACAATGATTCAAGAAAAGATTCTTCACAGGAGATAGACATATTTATATGGTAGGGTTTATGTTTCATTACCTCCTTAAATAAATATCAAAATGCAAGTCTTAAATTATATTTGATTTTCAACATTTTGATCTAAGAGGAAGATATTCCTTTTAAATATTTACTATAGACAAAGTAAAAAAATGTATTTATTTCACAGCAAGTCTACAAACTAGATTTTGGGGCGTCCAAACAGTCCTGGAGGGCCACTGTCCTGCAGAGTTTAGCTCCAGCTTACCTCAACACACCTGACTGGAAGTTTCTAGTATGCCTAATAAGACCTTGATTAGCTGGTTCAGGTGTGTTTAACTGGGATTGGAGATGAACTCTGCAGGAGCAGGATTGGACAGCCCTGCTTTAGACAGGCAGCAAGGACTAATACAAGATGGGAAAAATGTGCAGTGATCTATGGTAAATTATCCATATTCTAAAAGCCTGTGATCAAGTGTTGTTCTTAGCCAGTGGTTTGCAGAGTGAGATCACACGCTGGGCTGCAGTCGGGTCACGCTCTGTTTCTGCTGGTTATATCTGCGGAAGAAAGCTTTTCCGAACTCATATGTGCTGATCATAATAGCACATGCCGGAGCCACTTTAATCAGCCTTGGCATAAAACCTGAGGATGAGAAAAAGAGTGTACCACTGAGACATCTAGTGTTGATTTGAAAATCAAGGTACCAAAAACAACTGAAAACAATTCAGAATCGTATAGTTAAACTAAAACACACACACTATATAAAATGTAATATAGTGTAATATAGTAATATAAAAAGTACTGTGCAAAAGTCTTAGGCCACCACCATCTTTGTTGTTTTTTAGCAATGTTTTAATGACCGTCCATTTTATTTTTTGGTCTTTATTACGATACAAACTGAAAACAGTAAATATGTACACAAAATGGCTTCTTTAAGTAAAAATCAGTATTTAGTGTGACCTCCTGGACTTCTTCCATTTCGAAAAGAACATATAAGAAACTTCTCATCATATTTTGAAAGTTTTCTTGGCCTTCCAGTCCTTTTCCATTTCATTTAGGTTTAAGAGAGCCAGGTTCCTGCTATTGCCTATAGAAGTCTTTTTTTTTCTGTTTTATAATACTGCATACAAATTTCCTGTATTTTCTGGTTATATTCTAAAAAAGAGACTGAAAAATAATTATATATGGTCATTATACCATTGCTAAAACAACATCTAATGGTGGCCTAAGACTTTTGCACAGTACTGTATATATTAAAAAAAAAAAAATCTTAGTGACCTCAAATGTTTAAACGCTAGTGTATATATATATATACACACACACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU159023 True 1893 lncRNA 0.34 2 3112268 3114186

Neighbor

gene id symbol gene type direction distance location
CI01000027_03101390_03106479 NA coding downstream 5789 3101089 ~ 3106479 (-)
CI01000027_03035114_03099542 ADAM22 coding downstream 12726 3035114 ~ 3099542 (-)
CI01000027_02989304_02990854 NA coding downstream 121414 2989289 ~ 2990854 (-)
CI01000027_02984235_02987159 CCDC127, CCDC127A coding downstream 125109 2984007 ~ 2987159 (-)
CI01000027_02961909_02972343 RNF144B coding downstream 139925 2961764 ~ 2972343 (-)
CI01000027_03117518_03132307 RUNDC3B coding upstream 1447 3115633 ~ 3132307 (-)
CI01000027_03186359_03192441 NA coding upstream 71913 3186099 ~ 3192441 (-)
CI01000027_03261114_03264008 POLR3GLB, POLR3GL coding upstream 146928 3261114 ~ 3264008 (-)
CI01000027_03297095_03298505 NA coding upstream 182846 3297032 ~ 3299512 (-)
CI01000027_03301041_03302954 NA coding upstream 186714 3300900 ~ 3303506 (-)
G139883 NA non-coding downstream 164352 2947331 ~ 2947916 (-)
G139929 NA non-coding downstream 182502 2929308 ~ 2929766 (-)
G139845 NA non-coding downstream 256668 2788349 ~ 2855600 (-)
G139743 NA non-coding downstream 374197 2737348 ~ 2738071 (-)
G139839 NA non-coding downstream 377951 2733645 ~ 2734317 (-)
G139972 NA non-coding upstream 23621 3137807 ~ 3138013 (-)
G139967 NA non-coding upstream 44209 3158395 ~ 3159374 (-)
G139980 NA non-coding upstream 45864 3160050 ~ 3160407 (-)
G139998 NA non-coding upstream 82284 3196470 ~ 3196703 (-)
CI01000027_02226447_02227499 NA other downstream 884243 2225781 ~ 2227499 (-)
CI01000027_02119227_02124423 NA other downstream 986240 2119131 ~ 2125142 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 other downstream 1792107 1302034 ~ 1321178 (-)
CI01000027_01241417_01245177 NA other downstream 1865291 1240478 ~ 1246267 (-)
G139117 NA other downstream 2874689 234212 ~ 237579 (-)
G140118 NA other upstream 387348 3509352 ~ 3584679 (-)
CI01000027_03787377_03788902 NA other upstream 673192 3787377 ~ 3790279 (-)
CI01000027_03922380_03931033 NA other upstream 808210 3922242 ~ 3931033 (-)
G141481 NA other upstream 1258061 4372247 ~ 4412810 (-)
G141488 NA other upstream 1393289 4507475 ~ 4508971 (-)

Expression


Co-expression Network