Gene
RNA
| Item | Value |
|---|---|
| gene id | G138836 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000027 |
| NCBI id | null |
| chromosome length | 10680226 |
| location | 3129459 ~ 3136867 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU157742 | True | 553 | lncRNA | 0.45 | 3 | 3129459 | 3136867 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000027_03110196_03113083 | NA | coding | upstream | 16050 | 3109207 ~ 3113409 (+) |
| CI01000027_03014464_03027710 | E430025E21RIK, STRUMPELLIN, KIAA0196 | coding | upstream | 101597 | 3013856 ~ 3027862 (+) |
| CI01000027_03008262_03011156 | NA | coding | upstream | 117464 | 3008262 ~ 3011995 (+) |
| CI01000027_02995394_03005981 | ATAD2 | coding | upstream | 123462 | 2995394 ~ 3005997 (+) |
| CI01000027_02991231_02994560 | PSMA2 | coding | upstream | 134742 | 2991231 ~ 2994717 (+) |
| CI01000027_03142352_03156415 | NA | coding | downstream | 5243 | 3142110 ~ 3157077 (+) |
| CI01000027_03159177_03163102 | NA | coding | downstream | 22102 | 3158969 ~ 3163325 (+) |
| CI01000027_03174793_03181990 | NA | coding | downstream | 37926 | 3174793 ~ 3182308 (+) |
| CI01000027_03202787_03208051 | MTX1A | coding | downstream | 65920 | 3202787 ~ 3208301 (+) |
| CI01000027_03212432_03231800 | THBS3, THBS3A | coding | downstream | 75565 | 3212432 ~ 3231862 (+) |
| G138835 | NA | non-coding | upstream | 1517 | 3127355 ~ 3127942 (+) |
| G138834 | NA | non-coding | upstream | 2184 | 3127043 ~ 3127275 (+) |
| G138833 | NA | non-coding | upstream | 3784 | 3125449 ~ 3125675 (+) |
| G138832 | NA | non-coding | upstream | 4430 | 3124797 ~ 3125029 (+) |
| G138831 | NA | non-coding | upstream | 6293 | 3122874 ~ 3123166 (+) |
| G138859 | NA | non-coding | downstream | 54753 | 3191620 ~ 3191938 (+) |
| G138888 | NA | non-coding | downstream | 111611 | 3248478 ~ 3248706 (+) |
| G138892 | NA | non-coding | downstream | 118063 | 3254930 ~ 3255207 (+) |
| G138884 | NA | non-coding | downstream | 172963 | 3309830 ~ 3314832 (+) |
| G138904 | NA | non-coding | downstream | 182416 | 3319283 ~ 3320531 (+) |
| G138515 | NA | other | upstream | 1452599 | 1664408 ~ 1676860 (+) |
| G138436 | NA | other | upstream | 1621643 | 1506961 ~ 1507816 (+) |
| G138290 | NA | other | upstream | 2130278 | 995970 ~ 999181 (+) |
| G138247 | NA | other | upstream | 2259884 | 855388 ~ 893121 (+) |
| G138238 | NA | other | upstream | 2297776 | 829774 ~ 831683 (+) |
| G138915 | NA | other | downstream | 347520 | 3484387 ~ 3486647 (+) |
| G138953 | NA | other | downstream | 365205 | 3502072 ~ 3520065 (+) |
| G140436 | NA | other | downstream | 1600531 | 4737398 ~ 4774262 (+) |
| G140440 | NA | other | downstream | 1643550 | 4780417 ~ 4785660 (+) |
| CI01000027_05050310_05055447 | NA | other | downstream | 1912056 | 5050310 ~ 5055755 (+) |
