G138888


Basic Information

Item Value
gene id G138888
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3248478 ~ 3248706 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU157811
GGGAACCAAAACCATTTAGTTACCAACATTCTTCAAAATATCTTTTGTGTTCCACAGAAAAAGAAATGCATACAAGTTTGGAATGACATGAGGGTCAATAAATGATTAAAAACACATTTCACCTTTAAAGGCACAGTATGAAAGTCGCTTATTCAAAACAATAACAAAGGCAGATTGATGATGCCGTGAATCAGCATGGAATCATGGGAGCTGTCGTCTTCACCTCCAC

Function

NR:

description
PREDICTED: glutamate receptor ionotropic, delta-1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157811 True 229 lncRNA 0.37 1 3248478 3248706

Neighbor

gene id symbol gene type direction distance location
CI01000027_03243374_03247133 TXNIP, TXNIPB coding upstream 1308 3243154 ~ 3247170 (+)
CI01000027_03233523_03240000 HFE2 coding upstream 8476 3233523 ~ 3240002 (+)
CI01000027_03212432_03231800 THBS3, THBS3A coding upstream 16616 3212432 ~ 3231862 (+)
CI01000027_03202787_03208051 MTX1A coding upstream 40177 3202787 ~ 3208301 (+)
CI01000027_03174793_03181990 NA coding upstream 66170 3174793 ~ 3182308 (+)
CI01000027_03278134_03279807 ANKRD34A coding downstream 29428 3278134 ~ 3281022 (+)
CI01000027_03335011_03357910 SLC4A7 coding downstream 86305 3335011 ~ 3358277 (+)
CI01000027_03421902_03436988 NA coding downstream 173122 3421828 ~ 3437216 (+)
CI01000027_03470743_03477848 TBX20 coding downstream 221914 3470620 ~ 3479641 (+)
CI01000027_03524553_03546701 SMARCC1, SMARCC1A coding downstream 274901 3523607 ~ 3546701 (+)
G138859 NA non-coding upstream 56540 3191620 ~ 3191938 (+)
G138836 NA non-coding upstream 111611 3129459 ~ 3136867 (+)
G138835 NA non-coding upstream 120536 3127355 ~ 3127942 (+)
G138834 NA non-coding upstream 121203 3127043 ~ 3127275 (+)
G138833 NA non-coding upstream 122803 3125449 ~ 3125675 (+)
G138892 NA non-coding downstream 6224 3254930 ~ 3255207 (+)
G138884 NA non-coding downstream 61124 3309830 ~ 3314832 (+)
G138904 NA non-coding downstream 70577 3319283 ~ 3320531 (+)
G138925 NA non-coding downstream 168978 3417684 ~ 3417948 (+)
G138926 NA non-coding downstream 169717 3418423 ~ 3418690 (+)
G138515 NA other upstream 1571618 1664408 ~ 1676860 (+)
G138436 NA other upstream 1740662 1506961 ~ 1507816 (+)
G138290 NA other upstream 2249297 995970 ~ 999181 (+)
G138247 NA other upstream 2378903 855388 ~ 893121 (+)
G138238 NA other upstream 2416795 829774 ~ 831683 (+)
G138915 NA other downstream 235681 3484387 ~ 3486647 (+)
G138953 NA other downstream 253366 3502072 ~ 3520065 (+)
G140436 NA other downstream 1488692 4737398 ~ 4774262 (+)
G140440 NA other downstream 1531711 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 1800217 5050310 ~ 5055755 (+)

Expression


Co-expression Network