XLOC_008581 (zgc:101731)


Basic Information

Item Value
gene id XLOC_008581
gene name zgc:101731
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 29123031 ~ 29138266 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017140
CTGCTCTCGCCGAGTACATGATGCTGAATCAGATCGATGAGCAAACACAGGTGTGGAGCGAGAGTTGGTGAACAAAACGATCTTTGTTTTTGACCATCCTCAGGGAAAATAACGCTTAAACGTGTACCTGCTGTCATACGTTAGGATGGCTACCGACTCCACCATGAGATCCGAAGTGGAGGAGTTACAGAAGAAGGCCAATCAGATGACTGATGAGTCTCTTGAGGTCACCAGAAACATGAAGCTTCTATTGGAGGAGAGTAAAGATGCGGGCATCAGGACACTTGTTATGCTGGACGAGCAGGGAGAACAACTGGACCGCATAGAAGAGGGCTTGGATCAGATCAACAAGGACAtgaaggaggctgagaaaaatctGACTGACATGGCCATGTGTTGCGGTCTGTGCATCTGGCCATGTACAAAATTAAAGGACTTTGAAGCAAGTGGAGCATATAAGAAGGTGTGGGGTAATAATCAAGATGGAGTGGTGTCGAGCCAGCCATCTTCTCGCGTGGTGGATGAGCGAGAGAAGATGACCATGAGCGGTGGATATATAAGAAGAGTGACAAATGATGCAAGGGAGGATGAAATGGAGGAGAATTTGGCCCAGGTTGGCAGTATCCTTGGCAACCTCAGAAGCATGGCACTCGACATGGGAAATGAAATCGACACCCAGAACGTCCAGATTGAACGCATACAGAGCAAGGCCGTGGTCAATGAATCACGCATCAACGAGGCCAACCAGAGAGCCACAAAGCTAATATCAAGATAAAACATAGGATTTTGTTGTGTTAAACACGTCTTCTTTAGCAAAATGTGCACATGATGATacaaattgtacatttaaatgaTTGCCTACTGATATGACAGTAAGAAATATTATTAGGCCCTGACAACATAGCTGTACTTTCATTAAGGAAAAATGG
>TCONS_00017141
ACATGATGCTGAATCAGATCGATGAGCAAACACAGGTGTGGAGCGAGAGTTGGTGAACAAAACGATCTTTGTTTTTGACCATCCTCAGGGAAAATAACGCTTAAACGTGTACCTGCTGTCATACGGATGGCTACCGACTCCACCATGAGATCCGAAGTGGAGGAGTTACAGAAGAAGGCCAATCAGATGACTGATGAGTCTCTTGAGGTCACCAGAAACATGAAGCTTCTATTGGAGGAGAGTAAAGATGCGGGCATCAGGACACTTGTTATGCTGGACGAGCAGGGAGAACAACTGGACCGCATAGAAGAGGGCTTGGATCAGATCAACAAGGACAtgaaggaggctgagaaaaatctGACTGACATGGCCATGTGTTGCGGTCTGTGCATCTGGCCATGTACAAAATTAAAGGACTTTGAAGCAAGTGGAGCATATAAGAAGGTGTGGGGTAATAATCAAGATGGAGTGGTGTCGAGCCAGCCATCTTCTCGCGTGGTGGATGAGCGAGAGAAGATGACCATGAGCGGTGGATATATAAGAAGAGTGACAAATGATGCAAGGGAGGATGAAATGGAGGAGAATTTGGCCCAGGTTGGCAGTATCCTTGGCAACCTCAGAAGCATGGCACTCGACATGGGAAATGAAATCGACACCCAGAACGTCCAGATTGAACGCATACAGAGCAAGGCCGTGGTCAATGAATCACGCATCAACGAGGCCAACCAGAGAGCCACAAAGCTAATATCAAGATAAAACATAGGATTTTGTTGTGTTAAACACGTCTTCTTTAGCAAAATGTGCACATGATGATacaaattgtacatttaaatgaTTGCCTACTGATATGACAGTAAGAAATATTATTAGGCCCTGACAACATAGCTGTACTTTCATTAAGGAAAAATGGATTGAATGTTGACTAATCTGTTTTGTGTTTGTAATTTAAGCATGTATtgtacatgaaagcacttcattTAGTCTGCTATCCTGGTTTTTGAAACCCACAGAACACTTGTGATGGGTAGTAATAGCTCactattcagaaaaaaaaagtttctaaagTTTTTAGGTAAATGTGATCtcttttgtctatttatttttaataaatttgttttaaaaga
>TCONS_00017142
ATGATGCTGAATCAGATCGATGAGCAAACACAGGTGTGGAGCGAGAGTTGGTGAACAAAACGATCTTTGTTTTTGACCATCCTCAGGGAAAATAACGCTTAAACGTGTACCTGCTGTCATACGGATGGCTACCGACTCCACCATGAGATCCGAAGTGGAGGAGTTACAGAAGAAGGCCAATCAGATGACTGATGAGTCTCTTGAGGTCACCAGAAACATGAAGCTTCTATTGGAGGAGAGTAAAGATGCGGGCATCAGGACACTTGTTATGCTGGACGAGCAGGGAGAACAACTGGACCGCATAGAAGAGGGCTTGGATCAGATCAACAAGGACAtgaaggaggctgagaaaaatctGACTGACATGGCCATGTGTTGCGGTCTGTGCATCTGGCCATGTACAAAAGCAACTGGAGCGGATTGAGGAAGGACTGGACCAGATCAACCAGGACATGAGGGAAGCTGAGAAAAACCTTACAGATCTGGGCAAATGCTGTGGTCTGTGCTCCTGTGATAAATTAAAGGACTTTGAAGCAAGTGGAGCATATAAGAAGGTGTGGGGTAATAATCAAGATGGAGTGGTGTCGAGCCAGCCATCTTCTCGCGTGGTGGATGAGCGAGAGAAGATGACCATGAGCGGTGGATATATAAGAAGAGTGACAAATGATGCAAGGGAGGATGAAATGGAGGAGAATTTGGCCCAGGTTGGCAGTATCCTTGGCAACCTCAGAAGCATGGCACTCGACATGGGAAATGAAATCGACACCCAGAACGTCCAGATTGAACGCATACAGAGCAAGGCCGTGGTCAATGAATCACGCATCAACGAGGCCAACCAGAGAGCCACAAAGCTAATATCAAGATAAAACATAGGATTTTGTTGTGTTAAACACGTCTTCTTTAGCAAAATGTGCACATGATGATacaaattgtacatttaaatgaTTGCCTACTGATATGACAGTAAGAAATATTATTAGGCCCTGACAACATAGCTGTACTTTCATTAAGGAAAAATGGATTGAATGTTGACTAATCTGTTTTGTGTTTGTAATTTAAGCATGTATtgtacatgaaagcacttcattTAGTCTGCTATCCTGGTTTTTGAAACCCACAGAACACTTGTGATGGGTAGTAATAGCTCactattca
>TCONS_00017143
TGATGCTGAATCAGATCGATGAGCAAACACAGGTGTGGAGCGAGAGTTGGTGAACAAAACGATCTTTGTTTTTGACCATCCTCAGGGAAAATAACGCTTAAACGTGTACCTGCTGTCATACGTTAGGATGGCTACCGACTCCACCATGAGATCCGAAGTGGAGGAGTTACAGAAGAAGGCCAATCAGATGACTGATGAGTCTCTTGAGGTCACCAGAAACATGAAGCTTCTATTGGAGGAGAGTAAAGATGCGGGCATCAGGACACTTGTTATGCTGGACGAGCAGGGAGGTAATGAGTTCCCTCTGTAGTTAAATAGAGCTAAACAATGAACTAATTACATACAAACGCCTCATTAATTATTGCATCTATAGGAAATATGTTAATGCTGCTGTATATTTACAAGATGTGGAAGTACAGACTTTGCTCTTCATTCTTATTTTCAGTACGACATATATAAATAGCTATATATGATTCTGTACATATGGAACCTTGTATGTCTTTATGTGTGCATGCTTGCATATATTTCCCCCTTTCGATTTCCCTGCTGCCTTCCCCCATCTCCCCCGCATGGGCAGAACAACTGGACCGCATAGAAGAGGGCTTGGATCAGATCAACAAGGACAtgaaggaggctgagaaaaatctGACTGACATGGCCATGTGTTGCGGTCTGTGCATCTGGCCATGTACAAA
>TCONS_00017144
GATGCTGAATCAGATCGATGAGCAAACACAGGTGTGGAGCGAGAGTTGGTGAACAAAACGATCTTTGTTTTTGACCATCCTCAGGGAAAATAACGCTTAAACGTGTACCTGCTGTCATACGGATGGCTACCGACTCCACCATGAGATCCGAAGTGGAGGAGTTACAGAAGAAGGCCAATCAGATGACTGATGAGTCTCTTGAGGTCACCAGAAACATGAAGCTTCTATTGGAGGAGAGTAAAGATGCGGGCATCAGGACACTTGTTATGCTGGACGAGCAGGGAGGTAATGAGTTCCCTCTGTAGTTAAATAGAGCTAAACAATGAACTAATTACATACAAACGCCTCATTAATTATTGCATCTATAGGAAATATGTTAATGCTGCTGTATATTTACAAGATGTGGAAGTACAGACTTTGCTCTTCATTCTTATTTTCAGTACGACATATATAAATAGCTATATATGATTCTGTACATATGGAACCTTGTATGTCTTTATGTGTGCATGCTTGCATATATTTCCCCCTTTCGATTTCCCTGCTGCCTTCCCCCATCTCCCCCGCATGGGCAGAACAACTGGACCGCATAGAAGAGGGCTTGGATCAGATCAACAAGGACAtgaaggaggctgagaaaaatctGACTGACATGGCCATGTGTTGCGGTCTGTGCATCTGGCCATGTACAAAATTAAAGGACTTTGAAGCAAGTGGAGCATATAAGAAGGTGTGGGGTAATAATCAAGATGGAGTGGTGTCGAGCCAGCCATCTTCTCGCGTGGTGGATGAGCGAGAGAAGATGACCATGAGCGGTGGATATATAAGAAGAGTGACAAATGATGCAAGGGAGGATGAAATGGAGGAGAATTTGGCCCAGGTTGGCAGTATCCTTGGCAACCTCAGAAGCATGGCACTCGACATGGGAAATGAAATCGACACCCAGAACGTCCAGATTGAACGCATACAGAGCAAGGCCGTGGTCAATGAATCACGCATCAACGAGGCCAACCAGAGAGCCACAAAGCTAATATCAAGATAAAACATAGGATTTTGTTGTGTTAAACACGTCTTCTTTAGCAAAATGTGCACATGATGATacaaattgtacatttaaatgaTTGCCTACTGATATGACAGTAAGAAATATTATTAGGCCCTGACAACATAGCTGTACTTTCATTAAGGAAAAATGGATTGAATGTTGACTAATCTGTTTTGTGTTTGTAATTTAAGCATGTATtgtacatgaaagcacttcattTAGTCTGCTATCCTGGTTTTTGAAACCCACAGAACACTTGTGATGGGTAGTAATAGCTCactattcagaaaaaaaaagtttctaaagTTTTTAGGTAAATGTGATCtcttttgtctatttatttttaataaatttgttttaaaagagTTGATAAGAGTGCTTTTTCTAATGGATTTTTATTCTAAAGTATACCAGTCAAAGGTTTGAAAACATTAAGATttgttatcattttttaaaagatgtctctTCTGTTTACCaagtctgcatttatttgatcaattcaataaaaatatattgtaaacta

Function

symbol description
zgc:101731 Predicted to enable SNAP receptor activity and syntaxin binding activity. Predicted to be involved in synaptic vesicle fusion to presynaptic active zone membrane and synaptic vesicle priming. Predicted to be located in neuron projection and synapse. Predicted to be part of SNARE complex. Predicted to be active in plasma membrane. Is expressed in habenula; olfactory placode; otic placode; and peripheral olfactory organ.

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0016082 synaptic vesicle priming biological_process
GO:0006906 vesicle fusion biological_process
GO:0031629 synaptic vesicle fusion to presynaptic active zone membrane biological_process
GO:0005886 plasma membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0019905 syntaxin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-57 Predicted to enable SNAP receptor activity and syntaxin binding activity. Predicted to be involved in synaptic vesicle fusion to presynaptic active zone membrane and synaptic vesicle priming. Predicted to be located in neuron projection and synapse. Predicted to be part of SNARE complex. Predicted to be active in plasma membrane. Is expressed in habenula; olfactory placode; otic placode; and peripheral olfactory organ.

Ensembl:

ensembl_id ENSDARG00000040965

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017140 False 929 mRNA 0.45 8 29123031 29137894
TCONS_00017141 False 1124 mRNA 0.42 8 29123046 29138108
TCONS_00017142 False 1155 nonsense_mediated_decay 0.44 9 29123048 29138029
TCONS_00017143 False 695 lncRNA 0.43 4 29123049 29130878
TCONS_00017144 True 1565 lncRNA 0.39 7 29123050 29138266

Neighbor

gene id symbol gene type direction distance location
XLOC_008580 capns1b coding upstream 201 29113616 ~ 29122830 (+)
XLOC_008579 si:ch211-137a8.4 coding upstream 31224 29085955 ~ 29091807 (+)
XLOC_008578 si:ch211-137a8.2 coding upstream 51161 29024895 ~ 29071870 (+)
XLOC_008577 clip3 coding upstream 116842 28989573 ~ 29006189 (+)
XLOC_008576 gipr coding upstream 148911 28940352 ~ 28974120 (+)
XLOC_008582 zgc:113149 coding downstream 1860 29140126 ~ 29152619 (+)
XLOC_008583 BX537104.1 coding downstream 23390 29161656 ~ 29271467 (+)
XLOC_008584 rap1gap2a coding downstream 138242 29276508 ~ 29317067 (+)
XLOC_008585 gucy2f coding downstream 224448 29362714 ~ 29381134 (+)
XLOC_008586 gdpd5b coding downstream 249644 29387910 ~ 29484512 (+)
XLOC_008463 BX663520.1 misc upstream 7870749 21252191 ~ 21252282 (+)
XLOC_008574 BX088540.1 non-coding upstream 495129 28598647 ~ 28627902 (+)
XLOC_008573 NA non-coding upstream 571354 28548626 ~ 28551677 (+)
XLOC_008567 NA non-coding upstream 894597 28222431 ~ 28228434 (+)
XLOC_008564 NA non-coding upstream 959064 28160893 ~ 28163967 (+)
XLOC_008561 NA non-coding upstream 1263012 27857395 ~ 27860019 (+)
XLOC_008587 NA non-coding downstream 414777 29553043 ~ 29643810 (+)
XLOC_008588 NA non-coding downstream 457318 29595584 ~ 29597117 (+)
XLOC_008591 dre-mir-99-1 non-coding downstream 657317 29795583 ~ 29795666 (+)
XLOC_008592 dre-let-7c-1 non-coding downstream 657557 29795823 ~ 29795929 (+)

Expression


Co-expression Network