G138915


Basic Information

Item Value
gene id G138915
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3484387 ~ 3486647 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU157839
AAGAAACCAAAACCTGATTTTATTCAAAAACACACCTTATTTCAATGAGATGCATATATTCATATCTGTAAATATTTACTATTTATTTACACACAAGGAAGAGAAAAATAGTTATGCACTAAAGTAACTGCATGATTCACTAAGTCTTATGGTCTTATGAGTTTATCAACCAGTCTTGAGAAAAAAGTTTTTCGTAACAACATGGACAGCACATCCATGAAACCTCACCCCGACTTATTGATAAAGGCGGGAAGAGAAGCGGCATAGGGGGAAAATTGAACACCATTGAAGCAGCATTACAGACTTGCCAGGACATGGCAGAACATGTTGTACTATTTCATTATTATTTTTTAAGTTTATTGTCATTTTTTTCTCTTTACTGTCCACAGACAATGTGGAGACATCGGAGTTCAGTTGGCAGCGTGTGCGGGTCCCTCAGGGATGAGAGAGGTGAAGAAAGTGCTGATGAACGACCACGCGGCCGACAGGAAGCCCGGCTGATGCGGGCCTGCGTTCATGGGATCTTCAGGACCTTCCTCCCCGCTGTCCCCCTCATCATCCTCCATCCCCTCATCCATCATACGCTCCTACAGAAAAACAAAAAGAAAAGTGATGGCTAAGTTTGTTTATTATGCTTTGGTTCACAAGAAAGTCTCATAACGATTAAGTGTGAGAATGATATGTGTGAACATTTTAAGATTATTGGTATCTGCTGATAATTGTGAAATGTGTTTTAAACTCCTCACAGTCTTAATATATAATGAGCATTTTCTTTTATTTATTTATTTTTAAATATTTGATTCTATAATATACACTTAAAACACAAAAGTTTCTAGCACAATTTCCATGTCTACAAAACTATTTTCATCTTTTAGGGCAATATTTTTTTAAGATCATAGAAAACAAATTCAGTCAAGGGTGTCCAAACTTGAGTTCAGTTTTTTGAGTTTCAGCCACTATTACTAACCATCTCTTGCAGATCCTGATTTTGCTCAGCCTCGTCTTGTGGACCTTCTCCAGCTCTTGGATTCTGCAGTTCTGCTCTAAAGGGAAACCAGCCAGCCTGGTGCCTAAAGTCCACAAACACAGACAAACTATAAGACAATGAAGTGCAAATGCAATGTTAAACTTCCAAAAAGAACAATTCAGCTCATCAGGAAGCTTCTGTTTAGTATGTGACCTACAGATAAACCAGCAGCATGGCACCGATCACCATGACGAAGCGGCCGAAGGAGGAATAGAAATAGACGATGCTGAGCAGGATGGCGGCACGTGACACTGTGTACATCCAGTCCAGCCAGTCTCGGTTGAGCTCATCGTCGTTCAACATGGCTCCTCCCTGAGCGTTCATCTGGATGTTGGGGTTGGCAGGGCGGTCCTCAGGGGCGGGGTTGGGCCCCATAGGGGCTGCAGGTTCGTTAGGCTGAGCCGGCTGTGTGGCAGGGCCAGCGCTGGGAGTGGGAGAAGGGGCCGCACTGGACGCCCTGGAGGCTGCCATGGC
>TU157841
AAGAAACCAAAACCTGATTTTATTCAAAAACACACCTTATTTCAATGAGATGCATATATTCATATCTGTAAATATTTACTATTTATTTACACACAAGGAAGAGAAAAATAGTTATGCACTAAAGTAACTGCATGATTCACTAAGTCTTATGGTCTTATGAGTTTATCAACCAGTCTTGAGAAAAAAGTTTTTCGTAACAACATGGACAGCACATCCATGAAACCTCACCCCGACTTATTGATAAAGGCGGGAAGAGAAGCGGCATAGGGGGAAAATTGAACACCATTGAAGCAGCATTACAGACTTGCCAGGACATGGCAGAACATGTTGTACTATTTCATTATTATTTTTTAAGTTTATTGTCATTTTTTTCTCTTTACTGTCCACAGACAATGTGGAGACATCGGAGTTCAGTTGGCAGCGTGTGCGGGTCCCTCAGGGATGAGAGAGGTGAAGAAAGTGCTGATGAACGACCACGCGGCCGACAGGAAGCCCGGCTGATGCGGGCCTGCGTTCATGGGATCTTCAGGACCTTCCTCCCCGCTGTCCCCCTCATCATCCTCCATCCCCTCATCCATCATACGCTCCTACAGAAAAACAAAAAGAAAAATCCTGATTTTGCTCAGCCTCGTCTTGTGGACCTTCTCCAGCTCTTGGATTCTGCAGTTCTGCTCTAAAGGGAAACCAGCCAGCCTGGTGCCTAAAGTCCACAAACACAGACAAACTATAAGACAATGAAGTGCAAATGCAATGTTAAACTTCCAAAAAGAACAATTCAGCTCATCAGGAAGCTTCTGTTTAGTATGTGACCTACAGATAAACCAGCAGCATGGCACCGATCACCATGACGAAGCGGCCGAAGGAGGAATAGAAATAGACGATGCTGAGCAGGATGGCGGCACGTGACACTGTGTACATCCAGTCCAGCCAGTCTCGGTTGAGCTCATCGTCGTTCAACATGGCTCCTCCCTGAGCGTTCATCTGGATGTTGGGGTTGGCAGGGCGGTCCTCAGGGGCGGGGTTGGGCCCCATAGGGGCTGCAGGTTCGTTAGGCTGAGCCGGCTGTGTGGCAGGGCCAGCGCTGGGAGTGGGAGAAGGGGCCGCACTGGACGCCCTGGAGGCTGCCATGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157839 False 1501 lncRNA 0.43 2 3484387 3486647
TU157841 True 1131 TUCP 0.48 2 3484387 3486647

Neighbor

gene id symbol gene type direction distance location
CI01000027_03470743_03477848 TBX20 coding upstream 4746 3470620 ~ 3479641 (+)
CI01000027_03421902_03436988 NA coding upstream 47171 3421828 ~ 3437216 (+)
CI01000027_03335011_03357910 SLC4A7 coding upstream 126110 3335011 ~ 3358277 (+)
CI01000027_03278134_03279807 ANKRD34A coding upstream 203365 3278134 ~ 3281022 (+)
CI01000027_03243374_03247133 TXNIP, TXNIPB coding upstream 237217 3243154 ~ 3247170 (+)
CI01000027_03524553_03546701 SMARCC1, SMARCC1A coding downstream 36960 3523607 ~ 3546701 (+)
CI01000027_03570192_03600805 CSPG5A coding downstream 83545 3570192 ~ 3600805 (+)
CI01000027_03610825_03621755 PPOX coding downstream 124096 3610743 ~ 3621892 (+)
CI01000027_03660816_03671233 KCNJ9, KCNJ6, KCNJ5 coding downstream 174169 3660816 ~ 3671515 (+)
CI01000027_03675758_03678539 FBL coding downstream 189111 3675758 ~ 3678649 (+)
G138934 NA non-coding upstream 50330 3433847 ~ 3434057 (+)
G138926 NA non-coding upstream 65697 3418423 ~ 3418690 (+)
G138925 NA non-coding upstream 66439 3417684 ~ 3417948 (+)
G138904 NA non-coding upstream 163856 3319283 ~ 3320531 (+)
G138884 NA non-coding upstream 169555 3309830 ~ 3314832 (+)
G138918 NA non-coding downstream 5785 3492432 ~ 3497919 (+)
G138954 NA non-coding downstream 20875 3507522 ~ 3514673 (+)
G138985 NA non-coding downstream 138666 3625313 ~ 3625608 (+)
G139002 NA non-coding downstream 257362 3744009 ~ 3744238 (+)
G138515 NA other upstream 1807527 1664408 ~ 1676860 (+)
G138436 NA other upstream 1976571 1506961 ~ 1507816 (+)
G138290 NA other upstream 2485206 995970 ~ 999181 (+)
G138247 NA other upstream 2614812 855388 ~ 893121 (+)
G138238 NA other upstream 2652704 829774 ~ 831683 (+)
G138953 NA other downstream 15425 3502072 ~ 3520065 (+)
G140436 NA other downstream 1250751 4737398 ~ 4774262 (+)
G140440 NA other downstream 1293770 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 1562276 5050310 ~ 5055755 (+)
CI01000027_05069310_05070638 NA other downstream 1582705 5067917 ~ 5070868 (+)

Expression


Co-expression Network