G138958


Basic Information

Item Value
gene id G138958
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3787355 ~ 3787850 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU157891
AAAAAAAAAAAAGTAGCCTTACTTGTTTTGAGAGCGTGTAGCTTTTCTGGCCTCTCGAGCTTCGTTCTCTGCGTAGATCTTCCTATAGCAGTAAATCAGCACTCCAATCATCCACAACTGCAGGACTACGATCAACACGTACATGATGATCTCTGAGATTACAGCCGTCAGCTCGGGTCTCACCTTTTTCCACAACTGTGAGTTCCACCTCCTTGTTTATTATCACATGCTCCTCATCCAGCAAAAGGTATAGCGTGCGGTGGAAGGTACAGAGGTAAGTCCCAGTGTCGTTATATGTGACATTATGAATGAAGATGGCACCAATTTGCACATCCTTTGTCCCCATAGTCCCTTGCCACTCTAATCTTCCCTCATAGTTTTCATGAAGAATAGTGGGGAAAGGATATTCATA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU157891 True 412 lncRNA 0.44 2 3787355 3787850

Neighbor

gene id symbol gene type direction distance location
CI01000027_03783310_03784541 NA coding upstream 2814 3782922 ~ 3784541 (+)
CI01000027_03776983_03781753 NA coding upstream 5464 3776138 ~ 3781891 (+)
CI01000027_03771203_03774232 ETV2 coding upstream 12836 3769395 ~ 3774519 (+)
CI01000027_03744339_03748166 NA coding upstream 39189 3744339 ~ 3748166 (+)
CI01000027_03736903_03741917 NA coding upstream 44673 3736903 ~ 3742682 (+)
CI01000027_03798333_03830899 GRAMD1A coding downstream 10094 3797944 ~ 3831143 (+)
CI01000027_03845911_03849635 NA coding downstream 58061 3845911 ~ 3849670 (+)
CI01000027_03851507_03856447 PSMC4.L, PRS6B, PSMC4 coding downstream 63657 3851507 ~ 3856517 (+)
CI01000027_03863467_03864594 PSMC4 coding downstream 74646 3862496 ~ 3864877 (+)
CI01000027_03879680_03890591 NA coding downstream 91424 3879274 ~ 3891737 (+)
G139002 NA non-coding upstream 43117 3744009 ~ 3744238 (+)
G138985 NA non-coding upstream 161747 3625313 ~ 3625608 (+)
CI01000027_03570192_03600805 CSPG5A non-coding upstream 187544 3570192 ~ 3600805 (+)
G138954 NA non-coding upstream 272682 3507522 ~ 3514673 (+)
G138918 NA non-coding upstream 289436 3492432 ~ 3497919 (+)
G139016 NA non-coding downstream 36196 3824046 ~ 3824435 (+)
G139027 NA non-coding downstream 50355 3838205 ~ 3840442 (+)
G139023 NA non-coding downstream 77163 3865013 ~ 3865517 (+)
G140381 NA non-coding downstream 344988 4132838 ~ 4133069 (+)
G140384 NA non-coding downstream 352089 4139939 ~ 4140428 (+)
G138953 NA other upstream 267290 3502072 ~ 3520065 (+)
G138915 NA other upstream 300708 3484387 ~ 3486647 (+)
G138515 NA other upstream 2110495 1664408 ~ 1676860 (+)
G138436 NA other upstream 2279539 1506961 ~ 1507816 (+)
G138290 NA other upstream 2788174 995970 ~ 999181 (+)
G140436 NA other downstream 949548 4737398 ~ 4774262 (+)
G140440 NA other downstream 992567 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 1261073 5050310 ~ 5055755 (+)
CI01000027_05069310_05070638 NA other downstream 1281502 5067917 ~ 5070868 (+)
CI01000027_05071693_05072917 NA other downstream 1284212 5071693 ~ 5073136 (+)

Expression


Co-expression Network