G139027


Basic Information

Item Value
gene id G139027
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3838205 ~ 3840442 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU157961
TTGGATGACATGGGGGTGAGTAAATTATCAGGAAATTTGAATTCAGATCTTTTCTTTCTTTTGATGTACATCTGAGTGTAACGGATCATTGAAAAAGAAAAAATGTTGGACAGGGACTTGGTTCTATGCATCGGTTGATTTGCATTCATCACAATAAGATTAATAACGCATTTAAAATTTGAATTTTGATTTCATGCCGATGTTTAGTGAGCAAAGCAAAGAAGATTTGGAGATTTTTAAAAAATTGAAATAAGCAGATACATCAAAGGACACTATAAAGGGTGGGAGGAAAGAACACATTTCCCTCAGACCTGTCAAAAACTGCCGTCTAAACTTCTGTCAATGTCACTGCAGGACAGGGTCATTATTACATAACCCCTTTTTACAGAGATTACATTATGCAACTTATTCCAGATTAGACTGCACAATGGCTGTTTAATCCCAGGATAGAATTAATGCATTAAAGAGTTGAATTAAGCGCATTTTAAAATTGCTTCAGCATGCTTTTTTGGACGGAAAACTGAGAGACCTTCAATTTTGCATTGCATTCAAGGTAAACATTTGATCAATTATAAATTTCTTGGGAATTGATCCCATGACCTTGGTGTTGTTTGACATGTTTGAGCTACAGGAACACTGTGGGGTGCAATGAGAGATTCAAAGAAGGAGAAGAAAAGGTCTTTTGAGAGCTGATTCAGGCTTGCTACATGAAAACAAGCAGCCGAGGACAACGTTTCCATGCCAGCCAGCAGTCTCAAACTGTATAGCAGTGACATATACACTCTGGCCTCTCGGGAAATGGCAAAGATCTGTGACAAACACTGAGCTCCAGGGTGGAGACTTTCCATAGAAACAAAAGCTCTTTGATATGCCATGATGTTGGCCAGTATTCTAGTCACTGTGGTCTAACAATCGTCCTGTGGAACCCACATATTATCATCTCCGTCCACTCCAGTCTTTAATCTCTAAAATTAATCTACAATGAATGATACTGTTGGTGACCCACTAGTTAAGGGTAAAAGGCAAAAGACAGTGATATTTACCAGGGCGACCAGATCTAAAGACAAAGCCTCTTCTTTTTAAGCTCTAAGACACTGGGTTTTCTCACAATCAATTCTTGATGCTGGGATAACGAGTGGGCTGCAATTGCCATAAATATTAAACCAGCAAGAGACAGTCCTTCATACAGTATGTCCTTGTTTGCCCTTGCCCAGAATTAGCATCCACGCCCTCTCCATCCTCCCCCATCGTCTCATCCTCTTTCCGACACGCGCACACGTGCACTCAGACACACCTTTCCTCACATGCACAACAGTTTTCCACAGTGCCAGACCTGTACGTGCAAGAAAACTGCATCACTGCTTTCCGAAGGAGCATGACAGTGCTGGATTCTGCTGAAAATCTGCTTAGAACACAAAGACCTTGCTCCTCATTGGTTTGCCTGTTTCTAGGCCTCCGTTTTCAACCTCTGTTAAATGATTAATAGCCATCTTTCTTCTCCCCCAGCCTTATAGGCTCTACGACTAGGTCTAATCAGCAAAATAGCCTTCCTGTCTGCTGAAGCTCTGCAGTGCTGTCTTGACAGTTGGCCAGTAGATCCATTATAGATTGCTTGATCAGCAAGACATACTTGTTAAATCATATTAAAATACATTTGGCATATTTTTTATCATATATTTTTGTCACAGTAGTGTTTTATATATTCAATTTGGTAACAGTTTACAATAAGGTTCATTAGTTAACTACATTAGTTAACACGAACTAATAATGAACTGCACTTATACAGCATTAGTTAATGCACTGTGAACTAACATGAACAAACAATGAATAACTGTATTTTCATTAACGTTAACGAAGAGTAGTAAATACAGTAACAAATGTATTGCTCATGGTTAGTTAATGTTAGTTAATACATTAACTAATGTTTAACTAATGAACCTTATTGTAAAGTGTTACCTTCAATTTCTTCACTGTAATCTTTAATTGCCTTAAAATCACTATTTATCATAATTGCTCATACTTAGGGTTTAGGGGGTTTGTTCATCAGGCTGCACCGAAATTACAATCAAAATGCTGGTTGATATAATTATTTTCATAAATAATAAAGGATGTATGTTATAATTCTATAATATTTTGTCTAAACAGAAAATATAAAATGAGAATATATATATATA

Function

NR:

description
PREDICTED: adhesion G protein-coupled receptor A3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157961 True 2174 lncRNA 0.37 2 3838205 3840442

Neighbor

gene id symbol gene type direction distance location
CI01000027_03798333_03830899 GRAMD1A coding upstream 7062 3797944 ~ 3831143 (+)
CI01000027_03783310_03784541 NA coding upstream 53664 3782922 ~ 3784541 (+)
CI01000027_03776983_03781753 NA coding upstream 56314 3776138 ~ 3781891 (+)
CI01000027_03771203_03774232 ETV2 coding upstream 63686 3769395 ~ 3774519 (+)
CI01000027_03744339_03748166 NA coding upstream 90039 3744339 ~ 3748166 (+)
CI01000027_03845911_03849635 NA coding downstream 5469 3845911 ~ 3849670 (+)
CI01000027_03851507_03856447 PSMC4.L, PRS6B, PSMC4 coding downstream 11065 3851507 ~ 3856517 (+)
CI01000027_03863467_03864594 PSMC4 coding downstream 22054 3862496 ~ 3864877 (+)
CI01000027_03879680_03890591 NA coding downstream 38832 3879274 ~ 3891737 (+)
CI01000027_03907257_03920389 CEP85 coding downstream 66815 3907257 ~ 3920988 (+)
G139016 NA non-coding upstream 13770 3824046 ~ 3824435 (+)
G138958 NA non-coding upstream 50355 3787355 ~ 3787850 (+)
G139002 NA non-coding upstream 93967 3744009 ~ 3744238 (+)
G138985 NA non-coding upstream 212597 3625313 ~ 3625608 (+)
CI01000027_03570192_03600805 CSPG5A non-coding upstream 238394 3570192 ~ 3600805 (+)
G139023 NA non-coding downstream 24571 3865013 ~ 3865517 (+)
G140381 NA non-coding downstream 292396 4132838 ~ 4133069 (+)
G140384 NA non-coding downstream 299497 4139939 ~ 4140428 (+)
G140386 NA non-coding downstream 306046 4146488 ~ 4146794 (+)
G140391 NA non-coding downstream 327967 4168409 ~ 4168635 (+)
G138953 NA other upstream 318140 3502072 ~ 3520065 (+)
G138915 NA other upstream 351558 3484387 ~ 3486647 (+)
G138515 NA other upstream 2161345 1664408 ~ 1676860 (+)
G138436 NA other upstream 2330389 1506961 ~ 1507816 (+)
G138290 NA other upstream 2839024 995970 ~ 999181 (+)
G140436 NA other downstream 896956 4737398 ~ 4774262 (+)
G140440 NA other downstream 939975 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 1208481 5050310 ~ 5055755 (+)
CI01000027_05069310_05070638 NA other downstream 1228910 5067917 ~ 5070868 (+)
CI01000027_05071693_05072917 NA other downstream 1231620 5071693 ~ 5073136 (+)

Expression


Co-expression Network