G140308


Basic Information

Item Value
gene id G140308
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3998688 ~ 4036880 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU159483
TCCACACTTTATTCACTCAAAATAATTCAGTTCCAAAACAGTACATTTTCCATGTTACATTTTTATCTGCCACAGAGCTGACCATTATTTGTATCCACACATCACAACTTTCAATTCTACTGTTTGAACTTTTCTTTTCTGGATTCCACAAAATAGAAATTTCCTAAAGAATACATAACATTTACTCCAGCAAACAGTCTACGCTGGGAAAACATTATGAAATAGGCCCAAATCTATACAAATAACATGTTTTCCATTTGAACTATATATATATATTATATAAACAGTTCCCAATACAACGTCTATGCCTTCAGACTTTCTGACCTGTGCCACTAAAAAAACATTGGCATTTGGTCAGTCCCAAATTTGTGTATTTTCTGACATATTTGGTATTCAAAATACACAATTTCCTTTCCTTTGCATAAAATAATGAAGATGTTAGTAGCAAAAGATGACATAGGCCTATTTTCATTCTTCTGATATGAAAAACTTTGCCTGGTACTTCATCTGTTAATCAAATCTGCAATAATATAAAACAAAGATCAAATGAATGGTGTTTGTTTACTTCAACATGGATTGAATTGCTTCCTAAAGAACTCCTCTAAATTGCAAAAAAAAAAAATAATAATAATTTTGCCCATTTAAATGTATGATGGCCAATCTGGATCAATCTATACATTTCTAACATTTTTTCATTTTTAAAACAAATTATACCATATATGCTGGAGAAAAAGGAAATAGTCAACAAATGTAAACTCTAAAGAAACCTACAGAATAATTGTTTTTACAATAAGGTATTTTAACGGAAAGCATGCTAATGTATAAAAAAGGAGAATACTTCATTCTAGTCTCTTTGGCACAATACTTCAATCTGAAAATTTTGCTTTAGCCCTTTCTGTCTAATGTATTTAAAGGAATAGTTAACCCAAAAAAAAAAAAATGGAAAAAATGGTCACGATTTACACACCCTCAAATCTGACAAGCTCCAAAATACATTATAAAAGTGGTCCATTCTTTAATCCAAACGTATGTGTTATATTCCAAGTCTTCTGAATCCGACAGAGATTAAAATTAAAGTCACTGTTAATCGAAAACTTCTGTATGGCTTAAAAAGACTGGGATTATAGTGCACACGGAGCTTGACAAACATGATCACAACTGAATATTGTTGTATATAAAGAGCTGCATAAAAACCCTTCAAAAATTCATCTTTTGTGTCCACAAGAAAAAAAAAATACAACAAATAAGTTTTAATGGCATGAGGGTGAATTAATAATGATTTTTTCATAACAATAATTTTTATTTTAGGTGAACTGTTCAGGCGCAGAACAACTATTTTATGACAGACATTCTCAAGAATCTGCTTATTAGATATGGCACTGAATATTCCCCATCAAAATGTGTCTGTCAATATAAGCCAAGCTACGGCTGTAGCAGGAAGTTGCAACATCCATTCATTACTGACCACCCCCTGCATGACCTAAAGGTTTACGTGTTCCTCCAGGTCGGCCCAGTTGCTTGCGTGGACCCTTTCCTCTGCCAGCCCCTTCTGCCCTTCCAGTCCCTGTTCCTCCCCTCTTTCTTCTCTGTTCATGTCTCAGGGTTGCCGCTTCCTCTTTGAGAGCCTGAGCCCAAAAGGCATCAAATGAACCTGGCGCTTGGTAGCCCGGCTGGTTACTATCAAGTGAGTCTTTGGAGAGCAGAACCCATACACTAGGTACATTTCTGCTGACTGTGAGACTGTCCAACCCAGCCTCAGGCTCCAGGGGCTCCCAGACCTCCTGAACTGTGCGGTAGGCCAGCTTGGTATGCTGATGTAGTCCGTGAACACGACGTTTCAGGATCTCCACGCACGTGATGGCTTTAGCTACGCTCTGACCCACACCTGTGAACACGATTTGGCGGCTCAGATTCTCCCCCGACCCAACGCTCACCTCTGACCCTTCATTGGTGCCTGGATTATCTGCTGAAGGTGCTTTCTCCTCCATACGGCTTAAAGCAAACCTCATCAGGTTGCGGACTTTGCTGCCATCCTTCACTCGAACTTCAGGAGTGTTGCTGGGCAGGTTGGGGAACGGACACGGGCAGGGCTGCTCAACTGTGCGTGCTTTTCTGTAGTTCTCCATGAT
>TU159485
TATATATATATATATTATTATTATATAAACAGTTCCCAATACAACGTCTATGCCTTCAGACTTTCTGACCTGTGCCACTAAAAAAACATTGGCATTTGGTCAGTCCCAAATTTGTGTATTTTCTGACATATTTGGTATTCAAAATACACAATTTCCTTTCCTTTGCATAAAATAATGAAGATGTTAGTAGCAAAAGATGACATAGGCCTATTTTCATTCTTCTGATATGAAAAACTTTGCCTGGTACTTCATCTGTTAATCAAATCTGCAATAATATAAAACAAAGATCAAATGAATGGTGTTTGTTTACTTCAACATGGATTGAATTGCTTCCTAAAGAACTCCTCTAAATTGCAAAAAAAAAAAATAATAATAATTTTGCCCATTTAAATGTATGATGGCCAATCTGGATCAATCTATACATTTCTAACATTTTTTCATTTTTAAAACAAATTATACCATATATGCTGGAGAAAAAGGAAATAGTCAACAAATGTAAACTCTAAAGAAACCTACAGAATAATTGTTTTTACAATAAGGTATTTTAACGGAAAGCATGCTAATGTATAAAAAAGGAGAATACTTCATTCTAGTCTCTTTGGCACAATACTTCAATCTGAAAATTTTGCTTTAGCCCTTTCTGTCTAATGTATTTAAAGGAATAGTTAACCCAAAAAAAAAAAAATGGAAAAAATGGTCACGATTTACACACCCTCAAATCTGACAAGCTCCAAAATACATTATAAAAGTGGTCCATTCTTTAATCCAAACGTATGTGTTATATTCCAAGTCTTCTGAATCCGACAGAGATTAAAATTAAAGTCACTGTTAATCGAAAACTTCTGTATGGCTTAAAAAGACTGGGATTATAGTGCACACGGAGCTTGACAAACATGATCACAACTGAATATTGTTGTATATAAAGAGCTGCATAAAAACCCTTCAAAAATTCATCTTTTGTGTCCACAAGAAAAAAAAAATACAACAAATAAGTTTTAATGGCATGAGGGTGAATTAATAATGATTTTTTCATAACAATAATTTTTATTTTAGGTGAACTGTTCAGGCGCAGAACAACTATTTTATGACAGACATTCTCAAGAATCTGCTTATTAGATATGGCACTGAATATTCCCCATCAAAATGTGTCTGTCAATATAAGCCAAGCTACGGCTGTAGCAGGAAGTTGCAACATCCATTCATTACTGACCACCCCCTGCATGACCTAAAGGTTTACGTGTTCCTCCAGGTCGGCCCAGTTGCTTGCGTGGACCCTTTCCTCTGCCAGCCCCTTCTGCCCTTCCAGTCCCTGTTCCTCCCCTCTTTCTTCTCTGTTCATGTCTCAGGGTTGCCGCTTCCTCTTTGAGAGCCTGAGCCCAAAAGGCATCAAATGAACCTGGCGCTTGGTAGCCCGGCTGGTTACTATCAAGTGAGTCTTTGGAGAGCAGAACCCATACACTAGGTACATTTCTGCTGACTGTGAGACTGTCCAACCCAGCCTCAGGCTCCAGGGGCTCCCAGACCTCCTGAACTGTGCGGTAGGCCAGCTTGGTATGCTGATGTAGTCCGTGAACACGACGTTTCAGGATCTCCACGCACGTGATGGCTTTAGCTACGCTCTGACCCACACCTGTGAACACGATTTGGCGGCTCAGATTCTCCCCCGACCCAACGCTCACCTCTGACCCTTCATTGGTGCCTGGATTATCTGCTGAAGGTGCTTTCTCCTCCATACGGCTTAAAGCAAACCTCATCAGGTTGCGGACTTTGCTGCCATCCTTCACTCGAACTTCAGGAGTGTTGCTGGGCAGGTTGGGGAACGGACACGGGCAGGGCTGCTCAACTGTGCGTGCTTTTCTGTAGTTCTCCATGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159483 False 2129 lncRNA 0.39 2 3998688 4000846
TU159485 True 1874 lncRNA 0.39 2 3998688 4036880

Neighbor

gene id symbol gene type direction distance location
CI01000027_03969492_03973741 NA coding downstream 24512 3968698 ~ 3974176 (-)
CI01000027_03922380_03931033 NA coding downstream 67655 3922242 ~ 3931033 (-)
CI01000027_03898513_03905519 NA coding downstream 92194 3897266 ~ 3906494 (-)
CI01000027_03832200_03836030 NA coding downstream 162158 3831205 ~ 3836530 (-)
CI01000027_03787377_03788902 NA coding downstream 208409 3787377 ~ 3790279 (-)
CI01000027_04039778_04040714 NA coding upstream 2229 4039109 ~ 4040714 (-)
CI01000027_04156256_04198063 NEK11 coding upstream 119376 4156256 ~ 4198063 (-)
CI01000027_04206424_04209369 NA coding upstream 168730 4205610 ~ 4209445 (-)
CI01000027_04233680_04249553 SCAP coding upstream 196762 4233642 ~ 4249553 (-)
CI01000027_04254645_04264857 NA coding upstream 217287 4254167 ~ 4264857 (-)
G140268 NA non-coding downstream 128817 3869467 ~ 3869871 (-)
G140267 NA non-coding downstream 149046 3849360 ~ 3849642 (-)
G140237 NA non-coding downstream 174250 3823904 ~ 3824438 (-)
G140262 NA non-coding downstream 193259 3802715 ~ 3805429 (-)
G140221 NA non-coding downstream 223608 3774856 ~ 3775080 (-)
G140363 NA non-coding upstream 70023 4106903 ~ 4107518 (-)
G140370 NA non-coding upstream 75716 4112596 ~ 4112829 (-)
G141402 NA non-coding upstream 83440 4120320 ~ 4120527 (-)
G141405 NA non-coding upstream 85441 4122321 ~ 4123420 (-)
G141421 NA non-coding upstream 121474 4158354 ~ 4158602 (-)
G140118 NA other downstream 414009 3509352 ~ 3584679 (-)
CI01000027_02226447_02227499 NA other downstream 1770663 2225781 ~ 2227499 (-)
CI01000027_02119227_02124423 NA other downstream 1872660 2119131 ~ 2125142 (-)
G141481 NA other upstream 335367 4372247 ~ 4412810 (-)
G141488 NA other upstream 470595 4507475 ~ 4508971 (-)
G141728 NA other upstream 840187 4877067 ~ 4877766 (-)
G141588 NA other upstream 1071455 5108335 ~ 5201155 (-)
CI01000027_05447458_05450346 PON2, PON3.2, PON3.1 other upstream 1412446 5447424 ~ 5450461 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location