Gene
RNA
| Item | Value |
|---|---|
| gene id | G141402 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000027 |
| NCBI id | null |
| chromosome length | 10680226 |
| location | 4120320 ~ 4120527 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: probable E3 ubiquitin-protein ligase TRIM8 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU160678 | True | 208 | lncRNA | 0.35 | 1 | 4120320 | 4120527 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000027_04039778_04040714 | NA | coding | downstream | 79606 | 4039109 ~ 4040714 (-) |
| CI01000027_04008272_04011121 | NA | coding | downstream | 107698 | 4008180 ~ 4012622 (-) |
| CI01000027_03969492_03973741 | NA | coding | downstream | 146144 | 3968698 ~ 3974176 (-) |
| CI01000027_03922380_03931033 | NA | coding | downstream | 189287 | 3922242 ~ 3931033 (-) |
| CI01000027_03898513_03905519 | NA | coding | downstream | 213826 | 3897266 ~ 3906494 (-) |
| CI01000027_04156256_04198063 | NEK11 | coding | upstream | 35729 | 4156256 ~ 4198063 (-) |
| CI01000027_04206424_04209369 | NA | coding | upstream | 85083 | 4205610 ~ 4209445 (-) |
| CI01000027_04233680_04249553 | SCAP | coding | upstream | 113115 | 4233642 ~ 4249553 (-) |
| CI01000027_04254645_04264857 | NA | coding | upstream | 133640 | 4254167 ~ 4264857 (-) |
| CI01000027_04324807_04339354 | NA | coding | upstream | 204149 | 4324676 ~ 4339354 (-) |
| G140370 | NA | non-coding | downstream | 7491 | 4112596 ~ 4112829 (-) |
| G140363 | NA | non-coding | downstream | 12802 | 4106903 ~ 4107518 (-) |
| G140308 | NA | non-coding | downstream | 83440 | 3998688 ~ 4036880 (-) |
| G140268 | NA | non-coding | downstream | 250449 | 3869467 ~ 3869871 (-) |
| G140267 | NA | non-coding | downstream | 270678 | 3849360 ~ 3849642 (-) |
| G141405 | NA | non-coding | upstream | 1794 | 4122321 ~ 4123420 (-) |
| G141421 | NA | non-coding | upstream | 37827 | 4158354 ~ 4158602 (-) |
| G141429 | NA | non-coding | upstream | 47865 | 4168392 ~ 4168706 (-) |
| G141461 | NA | non-coding | upstream | 143375 | 4263902 ~ 4264722 (-) |
| CI01000027_03787377_03788902 | NA | other | downstream | 331098 | 3787377 ~ 3790279 (-) |
| G140118 | NA | other | downstream | 535641 | 3509352 ~ 3584679 (-) |
| CI01000027_02226447_02227499 | NA | other | downstream | 1892295 | 2225781 ~ 2227499 (-) |
| CI01000027_02119227_02124423 | NA | other | downstream | 1994292 | 2119131 ~ 2125142 (-) |
| G141481 | NA | other | upstream | 251720 | 4372247 ~ 4412810 (-) |
| G141488 | NA | other | upstream | 386948 | 4507475 ~ 4508971 (-) |
| G141728 | NA | other | upstream | 756540 | 4877067 ~ 4877766 (-) |
| G141588 | NA | other | upstream | 987808 | 5108335 ~ 5201155 (-) |
| CI01000027_05447458_05450346 | PON2, PON3.2, PON3.1 | other | upstream | 1328799 | 5447424 ~ 5450461 (-) |
