XLOC_008587


Basic Information

Item Value
gene id XLOC_008587
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 29553043 ~ 29643810 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018984
cttcaggaacagggttggtgacccctgctctaaagtgtTCAAGAACTATAACTGCTAATTTCATATCGCTCCCTTAAAATACAGTGTTTTACTACAATGTCTAAGTGACTCTTCACACTCATTGGCTGTTGCTTCAGTACAACGATTACTATAGCAGTGTTTGGCAGAGTGAAGATTGAAAATGAGAACAAATATTTCCGTGCTTTACCAGCAAGGATAACATAAGATCTTTGTCCTGCTCAGAGACTGTATAAAAATATGTCCCGAAGAAGAAGCAGAACATGTCTGAACTGAACTCACAAGATATAAAGACCAACGACAACAACACTGACGAGCGTAAACAACAGCTGGAGATTTGATGACACCAATGTTGTTTTTTCTGATGGACAGGGGTGCCATTTTCCTCAAGCTTGGAAGGAGAGTTTTGATTTCTGAATGTGTCAAATCTTCCAAAACTTGTGGATCGCTGTGTCAGGACTCACAAACTCAAGGCCAGCCGTTGCTCACTTCAGCACTAGCTGCAGGATCAATGTCCTGATGCTGCGGGTCTGTGGAGGAGGACATGAAGACATGAGGACAGGCTTAAGCAGACGCTCGTCTCACTTCCATTTCATGCATCAGCGGATACAAGCTCAAACACCAGCATCAGCCCTTGCCGTTCAACCTTCTCCTGCTATCTGATATACAAATGAGGGACAGGCATAGCAAAGTGCTCCACCCCAACCACCCGTGGAAGGAGCCAGGAGGATTACTCCAAGAGCGCAAAGTAGGTCAACAAGACATGAAAACAAAGCAAGCGAGGAGAATGAATGGCACGCCACAAAAGAGCGAGCAGGTCTGACACATCGCAGCGCTTTGGCGGAGCTCCACTCCCCCTCTGCGCACATCCACAAACCACCACACATGTGGATCAGCGCCTGACCTGCTTCTCAGCTCCCCGTCTGCGCGAGACGGACAATTCTGACATGTTTTTGAAAGAATATAGGACATGCCagaaaaagaaactcattaaaaaataataacacgcACACAAAAAAGAGCCAACTGTGTTAGTAAT
>TCONS_00017164
aggaacagggttggtgacccctgctctaaagtgtTCAAGAACTATAACTGCTAATTTCATATCGCTCCCTTAAAATACAGTGTTTTACTACAATGTCTAAGTGACTCTTCACACTCATTGGCTGTTGCTTCAGTACAACGATTACTATAGCAGTGTTTGGCAGAGTGAAGATTGAAAATGAGAACAAATATTTCCGTGCTTTACCAGCAAGGATAACATAAGATCTTTGTCCTGCTCAGAGACTGTATAAAAATATGTCCCGAAGAAGAAGCAGAACATGTCTGAACTGAACTCACAAGATATAAAGACCAACGACAACAACACTGACGAGCGTAAACAACAGCTGGAGATTTGATGACACCAATGTTGTTTTTTCTGATGGACAGGGGTGCCATTTTCCTCAAGCTTGGAAGGAGAGTTTTGATTTCTGAATGTGTCAAATCTTCCAAAACTTGTGGATCGCTGTGTCAGgcCAGGACCATGACTCATCAAGCCAGGTTGATGGCTGAGCGTCTGTCAAGCTAGTTTGTTTGGGGTATGTTTAACATGCAGTGGTGGATTTGGGCATGGACAATATGGGCAATTGCCCAGGGTGGCAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000097151

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018984 False 1057 lncRNA 0.46 4 29553043 29643810
TCONS_00017164 True 599 lncRNA 0.42 3 29553047 29607028

Neighbor

gene id symbol gene type direction distance location
XLOC_008586 gdpd5b coding upstream 68531 29387910 ~ 29484512 (+)
XLOC_008585 gucy2f coding upstream 171909 29362714 ~ 29381134 (+)
XLOC_008584 rap1gap2a coding upstream 235976 29276508 ~ 29317067 (+)
XLOC_008583 BX537104.1 coding upstream 281576 29161656 ~ 29271467 (+)
XLOC_008582 zgc:113149 coding upstream 400424 29140126 ~ 29152619 (+)
XLOC_008589 nrip1a coding downstream 18591 29662401 ~ 29713359 (+)
XLOC_008590 zgc:153372 coding downstream 83989 29727799 ~ 29809715 (+)
XLOC_008591 dre-mir-99-1 coding downstream 151773 29795583 ~ 29795666 (+)
XLOC_008592 dre-let-7c-1 coding downstream 152013 29795823 ~ 29795929 (+)
XLOC_008593 dre-mir-125c coding downstream 157158 29800968 ~ 29801052 (+)
XLOC_008463 BX663520.1 misc upstream 8300761 21252191 ~ 21252282 (+)
XLOC_008574 BX088540.1 non-coding upstream 925141 28598647 ~ 28627902 (+)
XLOC_008573 NA non-coding upstream 1001366 28548626 ~ 28551677 (+)
XLOC_008567 NA non-coding upstream 1324609 28222431 ~ 28228434 (+)
XLOC_008564 NA non-coding upstream 1389076 28160893 ~ 28163967 (+)
XLOC_008594 NA non-coding downstream 303698 29947508 ~ 29954095 (+)
XLOC_008600 NA non-coding downstream 714621 30358431 ~ 30380319 (+)

Expression


Co-expression Network