G140490


Basic Information

Item Value
gene id G140490
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4401489 ~ 4403088 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU159692
ATTTATTTTAAATTTGCAGTTTAATATGGAGAGATTATTTTAAAATGAACAACTCCAATTGTTAAAAAACAAAACAAAGGAAGAAACACATATTCACATATTCAACAAAGACCATCTCACAATCTCATTCCTTATGCTTTCATTTCTAATAGGTTGTTTCAGGGGTTGGAAACATGTTGCTCCTCATGGAGCATTTTGTGTACCCAGGATTGCACTGAACGTGGATGAAGAGGTAAAACATTTTCGGTATCAGTAAGCAAGATTCATACACACAAATATTTCCCTTCTCCCCCCATTTCCCTCTAATCATCCTTCACTGGTCATGTGTTGGCTTTTGTTCAGAGAAATTCAGCTCTACTCTTTCTTCTTTCCGTCCTTTTCGTGATACTCAAGGAAGAAGTCGTTGCAGGCGACGGTGAGGGCGCCCACAAGGATGATGAACTCTGTGAAGTCCACCTCACCGTCGTTGTTTGAATCCAGGTCTCCCATAACTTTATCTACCGCATCCTTATCCTGTGCATTCCCAAGGTAGTTGCCCAGCTCCTGCGTTAGCATCTCTTTGAGTTCCTGCCTACTGAGAGTATATTTGTCGCCCTCATTCCCAGAGTACTTGTGGAACGTCTGAATCATCAGCTGCATGGCGTTCTCCAGAGTGGAGGCATTCTCTGAGTTAAAAGCGGACATTCTTGCTGTTAGATGGTTGCTGTTCTTCTGTTCCTTGAGGAGAG

Function

NR:

description
metal regulatory transcription factor 1-like

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU159692 True 728 lncRNA 0.42 3 4401489 4403088

Neighbor

gene id symbol gene type direction distance location
CI01000027_04381523_04393547 CHRNB2B coding upstream 7375 4381523 ~ 4394114 (+)
CI01000027_04350540_04357555 SHE coding upstream 43390 4350014 ~ 4358099 (+)
CI01000027_04213570_04229519 PTPN23, PTPN23A coding upstream 171812 4212498 ~ 4229677 (+)
CI01000027_04054186_04103227 NA coding upstream 297069 4053038 ~ 4104420 (+)
CI01000027_04015806_04037491 NA coding upstream 362715 4015730 ~ 4038774 (+)
CI01000027_04470309_04483532 NA coding downstream 67057 4470145 ~ 4483559 (+)
CI01000027_04485614_04488056 NA coding downstream 80803 4483891 ~ 4488056 (+)
CI01000027_04488278_04495470 FLAD1 coding downstream 85190 4488278 ~ 4496077 (+)
CI01000027_04497623_04499224 NA coding downstream 94535 4497623 ~ 4499348 (+)
CI01000027_04537765_04549872 NA coding downstream 134254 4537342 ~ 4549929 (+)
G140489 NA non-coding upstream 39232 4362049 ~ 4362257 (+)
G140482 NA non-coding upstream 79897 4321390 ~ 4321592 (+)
G140408 NA non-coding upstream 191058 4210199 ~ 4210431 (+)
G140394 NA non-coding upstream 226144 4174904 ~ 4175345 (+)
G140392 NA non-coding upstream 226828 4170063 ~ 4174661 (+)
G140447 NA non-coding downstream 1238 4404326 ~ 4413069 (+)
G140495 NA non-coding downstream 11266 4414354 ~ 4414576 (+)
G140465 NA non-coding downstream 24949 4428037 ~ 4430693 (+)
G140509 NA non-coding downstream 101766 4504854 ~ 4505152 (+)
G140512 NA non-coding downstream 110322 4513410 ~ 4513585 (+)
G138953 NA other upstream 881424 3502072 ~ 3520065 (+)
G138915 NA other upstream 914842 3484387 ~ 3486647 (+)
G138515 NA other upstream 2724629 1664408 ~ 1676860 (+)
G138436 NA other upstream 2893673 1506961 ~ 1507816 (+)
G138290 NA other upstream 3402308 995970 ~ 999181 (+)
G140436 NA other downstream 334310 4737398 ~ 4774262 (+)
G140440 NA other downstream 377329 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 645835 5050310 ~ 5055755 (+)
CI01000027_05069310_05070638 NA other downstream 666264 5067917 ~ 5070868 (+)
CI01000027_05071693_05072917 NA other downstream 668974 5071693 ~ 5073136 (+)

Expression


Co-expression Network