XLOC_008589 (nrip1a)


Basic Information

Item Value
gene id XLOC_008589
gene name nrip1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 29662401 ~ 29713359 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017165
TGAACATGGCATTGCAGAGTGCCGGGGATGCCTTGAATAAACAATTCAGTCAAGCGACTGACTGCAGGACTCAAGAGCACTAGAAAACTGCACATGTGGGGAATAGACGCTGTCAGCCCCAGCCACTTTccgttttttttaaaaacatctgaatTGTTCGTAAAGAGAAATGTTATACGAGCCTCTCCGACTCTTCTCTTAAATGCAGCATATTTTTCAACGGGATTCTCTTCAGTCACCACCCGAACAGGGCTGTCACCAGCTGACACTGTGGACAGAATTACTGGATGTGGGAAGTGATTGCACCCAGAACATTAAAGTACAGATGAGTTGCCATGGAGTTCTGCAAGACTGACAACATTATGATCCTGTACTTATCTTAACAAAGGCAAACATggatataaaatacaaaaagtcATGCTTAGCTCTTCCCTCCTGTTTGGGGGAATGGCTTGTGAAGCTGCATTAGGCCTTTCTTTTACGTAAAAAACAGAGTTTGGAAGCTAAAAACTTTAACGTCTCTTGGCAGAAAGTATAAGAACAATTTTTCCCTCTATTGTGGTAGATAACCATACAAGGGACTCTAGTATTGAACATGACTCATGGGGAAGAGCCTGGCCCTGAAACACACCAGGATTCTGCTGTATTAACATATCTGGAAGGCTTACTCATGCATCAGGTAGCAGGAGGACAGGGTGCGGCAGCAACACAGAGTGGAAGCCAAGAGCAGAGAAATAAGGATGGAACAGGGCATGCACAGCCTAATCATGGCATTAGACAGGAGCAGAACCGGACATATTCCCACTGTGGAGCCTCACAGCATTTCAGAAAGGCACGCCTTCTTAACTCCGAGGCCTGGACAGAAAGTGAGACTCAACGAAGATCAGTTCCCTCTGTTGCACTCAACGGGCAACATGAAGACCACCATAGTGGCCAAAATGGCTCTTCACAGGATAAAGGAGAGAGCACACTTCTAGCCAGTTTGCTACAGTCTTTTAGTTCTCGACTTCAAAATGTGAGCCTGCCACAGCAGATTATTCAAGGCTTGAGGCCACCAGACACCTCCTGCCAGATAAGCAAACCTGCACAAGAGGAAAAGGCAGATGTGCCTTGCCACAGACCTGCCTCGAGTCACCTCCAAGAGTTAGTGAGCAAGAGCAAACTTCAGAATCACAGCAACAGTGTGCCTTATCAACAGAGACGGTCTAGCCATGAAAGTTTTTCACAATCTCCTAAGGCACTGCAAAGTAGCACTCCTTCCCCATCTCCTGAGTCTCTATCTTGTACTGAGCGCCTAAAAGCAGTGGCAAGCTTGGTAAACATCAGATCAAGCCCTGCTCCATCTCCCAAACCAAGTGTTGCCTGCAGTCAACTGGCCCTTCTGCTTTCCAGTGAGGCCCACCTGCAACAGTATTCTCGAGAGCATGCCCTGAAAGCCAAACTTTCTGGACGATCAGCCAGTGAAAGACTATCTGCCATGGCCACACAACAGACACCAGATAAACAACCTACAACTTCTAGCCAAACTCATGGACTAAGCCTCTTACAAACCAAGAATGGAATATCTTCACAAATGTCAACAAGCTCCAGTAGAAAGAGTCCCAGCCAAATTTCAGGGCAAAGAAGGACAGAAAGTTCAATGAGGACAGGACATCGCTTCAGAGAGCGTCGACCTTTCGAAAAACAAGGCAGACCATCACAGAATTGTAGCAGTCTTCTTCTTCAGCTTCTTAACAGTCACAACACCTCACAGCGAATTAATGGACAGGGTCACTTGAAAGATGACTTCATTACCTTTGGCCCTCTGGCCTCTCCACTTTTTTCAGACAGTGAACACTCAAACCCTGACAGCAGTCTCACAAAAGACAGCAGTGATGCTGAGAGCAGTTACTCTAGTTGCTCTCCTATTGACCTTTCTCTGAAGGGCAGAACAAATGTACAAACACCAGTGTCTACTTCATCCTCACCTGTACTAGACAGACTCCCAGAGTCCTCATTTAACATGTGGAAGCCTGAGAGTTCCCCTCTCAAAGTATCAGCAGATCACAGAGAGATGGACTCCTGTTCAGAGATGAAGCCTCATCACAAGGTCACACTATTACAGTTGCTCTTGGATCACAAAAATAACGAGAGAGTAAACAAAAGTCTGGATAATCCAGATTTGCTGCGAGCTGTAATCCCTAAGGTCACTAGTGCATCTACAAGTAGCCAAAGTGTTTTCAGTACATCTAGGTGTAAGGACCCAAGTGACCTTAGTGGACACTGTGGATTGAGTTGTAAAAGTCCTAAACTTTTGCCAACATTATCCCAAAGTAGAGACTCAAACTGCAGTGCATCACCATATACACTTTATGGGTCTCCACATTCTCAGTGTGTCCCCTTGGACCTTTGTAAAGTGAAACAACCTACAAGTGATGTTAGAGTGAAAGAACCTGCCTTTAGTGCTAGCAAGCTGTTGCAGAATTTAGCTCAGTGTGGAAAACAAACCCCTGATATTTCACCTCCAACAAAGGCACATTTACCCCCTGTTAAACTCATGACTCAAGAACTGAAAGTTAACCATCCTCCAACTTTAATTGAGAAACTAACTGCACCAGTTCAAAAAAATACCCCACTGTGGGAAGAGGCTACAGCAAAACCTTCAAATGTGCCCGAAGCAACACAGCAAGTCTCGGAGATCGAGAATCTGCTTGAAAGACGCACAGTTCTGCAGCTGCTTTTGGGCAATGCTCCTCAGAAGGAAAAGGTAGgcaataaaagaaaaagagaacacAGTAAGACTAATTCTGGAGAAAAACCAATGCATCAAACAACAACCCAAGCAAATGGTCCTCCGTTGGATGTTACAATCAAAACTGAGCCAACTGAAGAGGGTCAAACTAATGACTACAACAAAATGTCACAGCAATGCCAGAATTCAGTTTTGGAGCAAAGAAGCTCCAGCGCCAGttatctttttcaagaaaacatcAAACAAGAACCACTTTCCCCAGAGGCTTCCACCAGAGATGGCCTTCTCTGTCATCTCCTTAAAAAACGACCCAAGGCACTACAGCGAAACAAGTTAGAGGACCTAAATAAGAGTTGTGTCAAAGAAGATTCAGCTGAAACCCAGGGACCAACAATCCCAAAGAAGCGAAAGTTTTCGATAGAACAAGAACATCAAAACTCTTTAATTCAGCCGACCAGCAAATTGGAACATTCTTGCAGCATAAAAGAAGACAATGGTAGTTATTTTGCCACTGAAGGTCTAGAGACTAGAGAAGCCAGAGACCCATCTAGCCCCCCTGAGGCAGACAGTCCACCAGCTAGGTTTCCACCGTATGAGTCTAACGAAAACCGAAGTTTCAATGTTTTAAAGCAGCTGCTTCTTTCAGACAACTGCTTGAAGGAATTGTCTCAACCAAGGAGTACATTCAGTTCGCCTTCACATACTGTGTTGAATGGAAATACAATCAAGCAACCATGCAATGGAGGTGAGCATCAAAACCTTCACAGAAGTCTGAGCCCCAGCAGTGCTTCTTCTAAAAAAACAAGCGGTCACAGACCAGAATCACCCCAAGTTACACAGCAAGAACCCGCAAAGTCAAAAATCGATTACAGCACCATGAAGGATTTGAAGGTCCCTACAAGGATGCTTAATGGAGATGATCAAACACAAAAATATGGGCTCGACTCACCTCGGTTTACCAAGACAAACCCTATTTTGTACTACATGCTCCAAAGGAGCAATGCACAACTGGTTAAAGAGGGGGAGGGACTAGAGGTAGGCTTGGGACAAATGCAGACAAAGGTCAAAAATGAGTCATCAGGTGATACTGAGGCCTTTGAACTTTGAAACAAAATTCACAGAATTACAATGGAACACTTAGTTGTGACTCACCACGGCTAAACGGGTCATAGAAGAAATACTAGTTTTGAGACTGTGAACCAGCTTCTGTGCTTGAACTAGAAATGTGCAACTTTTTACTCTCTTCTACTTATCTGATTGCTACAGTACTTTCTATCGAGGCATCTCACATTTTTCACTTGAATTACATGTCATTCAGTTCACAAGAAGACCATGAAACCAAAGTTCATTTTGAATATTTACAATCACAACTTTGGCTGatttctttcttactttttaaGTGGCAAAGGAAATAAAGTTTTCTACAATACAAAAGATGTGTGAAAGATTTGCCCTCATGTATTTGTAACAATATCAGTTCCCACTCCGTTTTCCACACAATGGTAGAGTTGGCCTGAGGCAGTAAGTTATGATGCACCAATGCACATGATAATCTGTATAAACAGATTGTGCCTCAGCAGTTGTTAGTGAATATTCCTCAATTCACCATACTGAAATGAAGAAATAACTGTTGTTACTTTTGTCAATGCCAGGAAGGCTCTAAATGTCATAGTATTTATACGttcaaatgaattaaattttGAAAAAGATAGACATCTCACATTGGTTCTGTATTGTTTAAAGAAACCAACAGCATTGCTAGGGCTGTATGTTCATTATCATGTTTGGATAATATTGAATATGAGTCCATCAGTATTAAAACATGGTATCTTGATATCTAAA
>TCONS_00017166
ATGACTCATGGGGAAGAGCCTGGCCCTGAAACACACCAGGATTCTGCTGTATTAACATATCTGGAAGGCTTACTCATGCATCAGGTAGCAGGAGGACAGGGTGCGGCAGCAACACAGAGTGGAAGCCAAGAGCAGAGAAATAAGGATGGAACAGGGCATGCACAGCCTAATCATGGCATTAGACAGGAGCAGAACCGGACATATTCCCACTGTGGAGCCTCACAGCATTTCAGAAAGGCACGCCTTCTTAACTCCGAGGCCTGGACAGAAAGTGAGACTCAACGAAGATCAGTTCCCTCTGTTGCACTCAACGGGCAACATGAAGACCACCATAGTGGCCAAAATGGCTCTTCACAGGATAAAGGAGAGAGCACACTTCTAGCCAGTTTGCTACAGTCTTTTAGTTCTCGACTTCAAAATGTGAGCCTGCCACAGCAGATTATTCAAGGCTTGAGGCCACCAGACACCTCCTGCCAGATAAGCAAACCTGCACAAGAGGAAAAGGCAGATGTGCCTTGCCACAGACCTGCCTCGAGTCACCTCCAAGAGTTAGTGAGCAAGAGCAAACTTCAGAATCACAGCAACAGTGTGCCTTATCAACAGAGACGGTCTAGCCATGAAAGTTTTTCACAATCTCCTAAGGCACTGCAAAGTAGCACTCCTTCCCCATCTCCTGAGTCTCTATCTTGTACTGAGCGCCTAAAAGCAGTGGCAAGCTTGGTAAACATCAGATCAAGCCCTGCTCCATCTCCCAAACCAAGTGTTGCCTGCAGTCAACTGGCCCTTCTGCTTTCCAGTGAGGCCCACCTGCAACAGTATTCTCGAGAGCATGCCCTGAAAGCCAAACTTTCTGGACGATCAGCCAGTGAAAGACTATCTGCCATGGCCACACAACAGACACCAGATAAACAACCTACAACTTCTAGCCAAACTCATGGACTAAGCCTCTTACAAACCAAGAATGGAATATCTTCACAAATGTCAACAAGCTCCAGTAGAAAGAGTCCCAGCCAAATTTCAGGGCAAAGAAGGACAGAAAGTTCAATGAGGACAGGACATCGCTTCAGAGAGCGTCGACCTTTCGAAAAACAAGGCAGACCATCACAGAATTGTAGCAGTCTTCTTCTTCAGCTTCTTAACAGTCACAACACCTCACAGCGAATTAATGGACAGGGTCACTTGAAAGATGACTTCATTACCTTTGGCCCTCTGGCCTCTCCACTTTTTTCAGACAGTGAACACTCAAACCCTGACAGCAGTCTCACAAAAGACAGCAGTGATGCTGAGAGCAGTTACTCTAGTTGCTCTCCTATTGACCTTTCTCTGAAGGGCAGAACAAATGTACAAACACCAGTGTCTACTTCATCCTCACCTGTACTAGACAGACTCCCAGAGTCCTCATTTAACATGTGGAAGCCTGAGAGTTCCCCTCTCAAAGTATCAGCAGATCACAGAGAGATGGACTCCTGTTCAGAGATGAAGCCTCATCACAAGGTCACACTATTACAGTTGCTCTTGGATCACAAAAATAACGAGAGAGTAAACAAAAGTCTGGATAATCCAGATTTGCTGCGAGCTGTAATCCCTAAGGTCACTAGTGCATCTACAAGTAGCCAAAGTGTTTTCAGTACATCTAGGTGTAAGGACCCAAGTGACCTTAGTGGACACTGTGGATTGAGTTGTAAAAGTCCTAAACTTTTGCCAACATTATCCCAAAGTAGAGACTCAAACTGCAGTGCATCACCATATACACTTTATGGGTCTCCACATTCTCAGTGTGTCCCCTTGGACCTTTGTAAAGTGAAACAACCTACAAGTGATGTTAGAGTGAAAGAACCTGCCTTTAGTGCTAGCAAGCTGTTGCAGAATTTAGCTCAGTGTGGAAAACAAACCCCTGATATTTCACCTCCAACAAAGGCACATTTACCCCCTGTTAAACTCATGACTCAAGAACTGAAAGTTAACCATCCTCCAACTTTAATTGAGAAACTAACTGCACCAGTTCAAAAAAATACCCCACTGTGGGAAGAGGCTACAGCAAAACCTTCAAATGTGCCCGAAGCAACACAGCAAGTCTCGGAGATCGAGAATCTGCTTGAAAGACGCACAGTTCTGCAGCTGCTTTTGGGCAATGCTCCTCAGAAGGAAAAGGTAGgcaataaaagaaaaagagaacacAGTAAGACTAATTCTGGAGAAAAACCAATGCATCAAACAACAACCCAAGCAAATGGTCCTCCGTTGGATGTTACAATCAAAACTGAGCCAACTGAAGAGGGTCAAACTAATGACTACAACAAAATGTCACAGCAATGCCAGAATTCAGTTTTGGAGCAAAGAAGCTCCAGCGCCAGttatctttttcaagaaaacatcAAACAAGAACCACTTTCCCCAGAGGCTTCCACCAGAGATGGCCTTCTCTGTCATCTCCTTAAAAAACGACCCAAGGCACTACAGCGAAACAAGTTAGAGGACCTAAATAAGAGTTGTGTCAAAGAAGATTCAGCTGAAACCCAGGGACCAACAATCCCAAAGAAGCGAAAGTTTTCGATAGAACAAGAACATCAAAACTCTTTAATTCAGCCGACCAGCAAATTGGAACATTCTTGCAGCATAAAAGAAGACAATGGTAGTTATTTTGCCACTGAAGGTCTAGAGACTAGAGAAGCCAGAGACCCATCTAGCCCCCCTGAGGCAGACAGTCCACCAGCTAGGTTTCCACCGTATGAGTCTAACGAAAACCGAAGTTTCAATGTTTTAAAGCAGCTGCTTCTTTCAGACAACTGCTTGAAGGAATTGTCTCAACCAAGGAGTACATTCAGTTCGCCTTCACATACTGTGTTGAATGGAAATACAATCAAGCAACCATGCAATGGAGGTGAGCATCAAAACCTTCACAGAAGTCTGAGCCCCAGCAGTGCTTCTTCTAAAAAAACAAGCGGTCACAGACCAGAATCACCCCAAGTTACACAGCAAGAACCCGCAAAGTCAAAAATCGATTACAGCACCATGAAGGATTTGAAGGTCCCTACAAGGATGCTTAATGGAGATGATCAAACACAAAAATATGGGCTCGACTCACCTCGGTTTACCAAGACAAACCCTATTTTGTACTACATGCTCCAAAGGAGCAATGCACAACTGGTTAAAGAGGGGGAGGGACTAGAGGTAGGCTTGGGACAAATGCAGACAAAGGTCAAAAATGAGTCATCAGGTGATACTGAGGCCTTTGAACTTTGA

Function

symbol description
nrip1a Predicted to enable signaling receptor binding activity and transcription coregulator activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in several structures, including forerunner cell group; hatching gland; mesoderm; nervous system; and optic vesicle. Human ortholog(s) of this gene implicated in CAKUT and osteoporosis. Orthologous to human NRIP1 (nuclear receptor interacting protein 1).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0003712 transcription coregulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040723-8 Predicted to enable signaling receptor binding activity and transcription coregulator activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in several structures, including forerunner cell group; hatching gland; mesoderm; nervous system; and optic vesicle. Human ortholog(s) of this gene implicated in CAKUT and osteoporosis. Orthologous to human NRIP1 (nuclear receptor interacting protein 1).

Ensembl:

ensembl_id ENSDARG00000068965

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017165 False 4573 mRNA 0.43 2 29662401 29713359
TCONS_00017166 True 3243 mRNA 0.45 1 29709382 29712624

Neighbor

gene id symbol gene type direction distance location
XLOC_008587 NA coding upstream 18591 29553043 ~ 29643810 (+)
XLOC_008588 NA coding upstream 65284 29595584 ~ 29597117 (+)
XLOC_008586 gdpd5b coding upstream 177889 29387910 ~ 29484512 (+)
XLOC_008585 gucy2f coding upstream 281267 29362714 ~ 29381134 (+)
XLOC_008584 rap1gap2a coding upstream 345334 29276508 ~ 29317067 (+)
XLOC_008590 zgc:153372 coding downstream 14440 29727799 ~ 29809715 (+)
XLOC_008591 dre-mir-99-1 coding downstream 82224 29795583 ~ 29795666 (+)
XLOC_008592 dre-let-7c-1 coding downstream 82464 29795823 ~ 29795929 (+)
XLOC_008593 dre-mir-125c coding downstream 87609 29800968 ~ 29801052 (+)
XLOC_008594 NA coding downstream 234149 29947508 ~ 29954095 (+)
XLOC_008463 BX663520.1 misc upstream 8410119 21252191 ~ 21252282 (+)
XLOC_008583 BX537104.1 non-coding upstream 390934 29161656 ~ 29271467 (+)
XLOC_008574 BX088540.1 non-coding upstream 1034499 28598647 ~ 28627902 (+)
XLOC_008573 NA non-coding upstream 1110724 28548626 ~ 28551677 (+)
XLOC_008600 NA non-coding downstream 645072 30358431 ~ 30380319 (+)

Expression


Co-expression Network