G140455


Basic Information

Item Value
gene id G140455
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4733708 ~ 4736668 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU159656
GGAAAAAATAGTCCCTGACCGTGAACAGCAACAGAAGTTACATTATTACGCCATTAGATGGTGGCAAAGACTGTCTTTATGAGTGTGTCAGTCAGTAGTGAAGACTTTTACATTGAAAAGACTGAATTGTTGTGAACACGGAACAAGATGCAACTGACAAATGCTTTGGCTAGCGCTGTCAGTCACGGGAAAACCCCTTAACTGTTAAAAGGACAAGATAATACATCAGACATTTAAACAGATTTTTATTATGAACATTGGACTGACCTGAAGGAGAATGCTAAATCTGAATGCAGGTAATAAACTCGCTCACTCAATCTTTTTCTCACAATACTCTTCTACATAATACAGTAAGCTTCAATGAACAATATCAATTGAGAACATACAGTTTACGTTGCTAAGAGTGGTTGCTAAGGGTGTTGTGTAGTGATACACAGAACCGTTGGGTGAAGCGGTCATAGCCGTGATTTATCGTGAATAAAACACAGCTATTGACCAATCAGAATCAAGGACAGGAACTAATCGTTTTATAATGTTTCCTGTGTATTTTCTGTTGATTAAAAAAAAAAGCAAAAGAATCTTTCTCCTCCCAGAGAAAAAAACAAAACAAAAAAACTTTTGTGTGCTTCATTTCCAATAGTTGGATATCGTGCGAACAAAGTCTGTGGAGCGCTTGTCTTTTTCCCTGACTGTTGCTACATTCTTCACATCCACATCATGGACGCTGTATGGCCTTCAGCTCCAAGACTATTATATCATGGTACCCAACACCCCTGGCATCTTTACTAGCCTCATCCGCTTCTTCCTTTTCTGGCAGTTCGGAGCAGTCCTTTCAAACAAGCCCTCCTATAAACTCATCCAAATCTGAGAGGGGATTTACATTGAATCTAATTAAGTGCCTTTTCCACTTTTTACGCTCTTTACTGTTTTTGTTTTTTGTCCATGCATTGGAAGTCAATGGTAACCAAAACTGTCTGGCTGCCAACGTTCTTTAGAATATATTCTTTTGTGTTCCACAGAAGAAATAAAGCCATACAGGTTCAACATGAGGGTGAGTAAATTATGACTTCAATGATGAGAACTTTAATTTTTTTGAGTGAACTATCCCTCATATATATATATATATATATATGTTTAACTTTATTTCTGCTCACAAAAGAGGATAATGTTTTTTCCATGCAATTTCAAAGAATTGGGACTGGAGCTTTTAGTGTTTAAAAAAGACACAAAAGCACCATCTAAGGAACTGTAGTAGTCATCATATTCCCATATGTCACAGGTTTTCTGAAGCCATAAGTTAAGATTTATGTGACACATTTTTAAGCCATTATTACCTGAAAATCTTATTCTTAGCTTTTTTTGGGACCTGTTTCATGAACGGACTGTTCTTTTGAGTGATCTTTTAATGAATCTAATGATTCGTCTGAATGAGTCATTCTCAAATATGACTAATCTGGCTCTTGAACTCACTGGAGGGAAAGATTATCAGACAATATTATGTGTTTTAGATCTATTTTAGGATACTTTTATGGCTTTAAAGGTTCCTGTACCCATTTTTTGTAATTGGATGGAAAATAATTTCTTTGTGCTTCCTGGAAGAGTCCTCAGAATTTCTTGAAAGAAAAGAGTCATACAGGTTTGTAACGACCTGTGGATGAGTAAATAATGACAGTACATTAATTTCTGGTGAATTCTCTTGAGTAACTGATCATTTTCACTTTTTCTCTTGGTTGATCCTTATAGGGATAAGGATGCTCTAAGTTTGTTTGGCAGGTATTTCTTAGTTAATAAGTGTTCAAACCTGTAAACATGACACACCCCGAACCAAGAACTCAAACTTGTTTCCTGTTACAGCCCTTTCTTTTGAAATCATGTGTTAGTATTAAGCAGGTGTGTTTTTTTTTTTTTATCTTGGGTACATACTATTCAGAGTGTCCTTTAGGAAAGTGTCACATTCTGTTACTTAAGTAATGAATGTAGTGTTTACAGAATCGTTCATTAATCATAGACCACTTTATTATAATATCATTCTTAATTGTGTCCAAATGGCAGTTTGGCAGCTATTTAATCAGCATCCAACTCAAGTAACAAACCCCAAATGAAACTTTGTGTGTTAAAACGTTGTGTCCTTTGTGTGGAAAAGAACAACAGAAACAGAGAAAATTAGTTTGAGTGAATGACGTTGGATTAAGAATATCTGTCGCAGAAGAAAAGGAATCTTGCGCACCTCTTTTCATGGTTCTTGTTTTGTAGTTGGAACAAAAAGGTCTTTTTTTTCTTGTCTTTGTGACTGTCAGAATACCATACTTCACAATAAGCCCATAAAAACAATTATTTAATTAAACAATAACTTTACACGTTCCTCACCTTTAGAGAACACCAAAGTCACACAAAATCTGAAGGCTTTATTTATGTGAGTTGAGGTGACAGGCACAATGGGGGAAGAATATTCGGCAAATTCACTAAATTACATAATCATAACCCATAAGATGGTAAGATGAAAATCTTAAGCAGTCTTTGGCTGTTAATGTTGTTTTGCATATGCTAAACAGGTTTGATCTGTGACAGGCAGAAACTTTTATTGGGTCTTAATGTACATCACTACATTATGGTACGTTGTTCACTGAAGTCTTTTCAAGTCTCCAAGACTTGAAGACTTTGTGAATAAAAATGGTTCTTATGATGATTTAAAGCATATCAACATTGTTTTATTGTATTGTTTATGGTTTCTGTGTTGTATGATTATGTTCTGTGTTTTACTTTAAGCTTAAATGTCTTTATGTTTCTTTGTACTATTTTATATCCTATGCAACTGTGTATATTACATCAGAGGGGATTTAGTGGGATGTTCTTTTTGAAGTGTTCTGAAAAAAAAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU159656 True 2878 lncRNA 0.35 2 4733708 4736668

Neighbor

gene id symbol gene type direction distance location
CI01000027_04725469_04727486 EFNA1B coding upstream 5425 4723893 ~ 4728283 (+)
CI01000027_04713891_04717190 NA coding upstream 16349 4713780 ~ 4717359 (+)
CI01000027_04655825_04667764 NA coding upstream 65841 4654783 ~ 4667867 (+)
CI01000027_04551022_04551875 NA coding upstream 181715 4550712 ~ 4551993 (+)
CI01000027_04537765_04549872 NA coding upstream 183779 4537342 ~ 4549929 (+)
CI01000027_04768212_04770488 KRTCAP2 coding downstream 31544 4768212 ~ 4770687 (+)
CI01000027_04774573_04774740 NA coding downstream 37905 4774573 ~ 4775489 (+)
CI01000027_04777135_04777760 NA coding downstream 39819 4776487 ~ 4779338 (+)
CI01000027_04835989_04851147 SNX27.L, SNX27B, SNX27, SNX27A coding downstream 99321 4835989 ~ 4851178 (+)
CI01000027_04860802_04872130 NA coding downstream 124134 4860802 ~ 4872566 (+)
G140597 NA non-coding upstream 24713 4708788 ~ 4708995 (+)
G140596 NA non-coding upstream 25202 4708225 ~ 4708506 (+)
G140587 NA non-coding upstream 41004 4692134 ~ 4692704 (+)
G140522 NA non-coding upstream 62231 4671107 ~ 4671477 (+)
G140512 NA non-coding upstream 220123 4513410 ~ 4513585 (+)
G140435 NA non-coding downstream 226 4736894 ~ 4822645 (+)
G140436 NA non-coding downstream 40536 4737398 ~ 4774262 (+)
G140475 NA non-coding downstream 88272 4824940 ~ 4825988 (+)
G140633 NA non-coding downstream 96344 4833012 ~ 4833260 (+)
G140454 NA non-coding downstream 136447 4873115 ~ 4874023 (+)
G138953 NA other upstream 1213643 3502072 ~ 3520065 (+)
G138915 NA other upstream 1247061 3484387 ~ 3486647 (+)
G138515 NA other upstream 3056848 1664408 ~ 1676860 (+)
G138436 NA other upstream 3225892 1506961 ~ 1507816 (+)
G138290 NA other upstream 3734527 995970 ~ 999181 (+)
G140440 NA other downstream 43749 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 312255 5050310 ~ 5055755 (+)
CI01000027_05069310_05070638 NA other downstream 332684 5067917 ~ 5070868 (+)
CI01000027_05071693_05072917 NA other downstream 335394 5071693 ~ 5073136 (+)

Expression


Co-expression Network