Gene
RNA
| Item | Value |
|---|---|
| gene id | G140435 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000027 |
| NCBI id | null |
| chromosome length | 10680226 |
| location | 4736894 ~ 4822645 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: lysyl oxidase homolog 4-like |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU159625 | False | 313 | lncRNA | 0.36 | 2 | 4736894 | 4812799 |
| TU159623 | False | 470 | lncRNA | 0.37 | 2 | 4812416 | 4822645 |
| TU159624 | False | 318 | lncRNA | 0.42 | 2 | 4812416 | 4822493 |
| TU159622 | True | 340 | lncRNA | 0.42 | 2 | 4812440 | 4822493 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000027_04725469_04727486 | EFNA1B | coding | upstream | 8611 | 4723893 ~ 4728283 (+) |
| CI01000027_04713891_04717190 | NA | coding | upstream | 19535 | 4713780 ~ 4717359 (+) |
| CI01000027_04655825_04667764 | NA | coding | upstream | 69027 | 4654783 ~ 4667867 (+) |
| CI01000027_04551022_04551875 | NA | coding | upstream | 184901 | 4550712 ~ 4551993 (+) |
| CI01000027_04537765_04549872 | NA | coding | upstream | 186965 | 4537342 ~ 4549929 (+) |
| CI01000027_04835989_04851147 | SNX27.L, SNX27B, SNX27, SNX27A | coding | downstream | 13344 | 4835989 ~ 4851178 (+) |
| CI01000027_04860802_04872130 | NA | coding | downstream | 38157 | 4860802 ~ 4872566 (+) |
| CI01000027_04887494_04956477 | KCNN3 | coding | downstream | 64671 | 4887316 ~ 4957488 (+) |
| CI01000027_04978217_04987503 | NA | coding | downstream | 155572 | 4978217 ~ 4987503 (+) |
| CI01000027_05018992_05033275 | NA | coding | downstream | 195615 | 5018260 ~ 5034290 (+) |
| G140455 | NA | non-coding | upstream | 226 | 4733708 ~ 4736668 (+) |
| G140597 | NA | non-coding | upstream | 27899 | 4708788 ~ 4708995 (+) |
| G140596 | NA | non-coding | upstream | 28388 | 4708225 ~ 4708506 (+) |
| G140587 | NA | non-coding | upstream | 44190 | 4692134 ~ 4692704 (+) |
| G140522 | NA | non-coding | upstream | 65417 | 4671107 ~ 4671477 (+) |
| G140475 | NA | non-coding | downstream | 2295 | 4824940 ~ 4825988 (+) |
| G140633 | NA | non-coding | downstream | 10367 | 4833012 ~ 4833260 (+) |
| G140454 | NA | non-coding | downstream | 50470 | 4873115 ~ 4874023 (+) |
| G140640 | NA | non-coding | downstream | 59435 | 4882080 ~ 4882366 (+) |
| G140641 | NA | non-coding | downstream | 59934 | 4882579 ~ 4882895 (+) |
| G138953 | NA | other | upstream | 1216829 | 3502072 ~ 3520065 (+) |
| G138915 | NA | other | upstream | 1250247 | 3484387 ~ 3486647 (+) |
| G138515 | NA | other | upstream | 3060034 | 1664408 ~ 1676860 (+) |
| G138436 | NA | other | upstream | 3229078 | 1506961 ~ 1507816 (+) |
| G138290 | NA | other | upstream | 3737713 | 995970 ~ 999181 (+) |
| CI01000027_05050310_05055447 | NA | other | downstream | 226278 | 5050310 ~ 5055755 (+) |
| CI01000027_05069310_05070638 | NA | other | downstream | 246707 | 5067917 ~ 5070868 (+) |
| CI01000027_05071693_05072917 | NA | other | downstream | 249417 | 5071693 ~ 5073136 (+) |
| G140862 | NA | other | downstream | 889967 | 5712612 ~ 5712702 (+) |
| CI01000027_05757143_05758496 | NA | other | downstream | 934337 | 5756982 ~ 5758881 (+) |
