G140436


Basic Information

Item Value
gene id G140436
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4737398 ~ 4774262 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU159628
TCGCCCTCATGTCGTTCCACACCCGTAAGATCTTCGTTCATCTTCGGAACACAAATTACGATATTTTTGATGAAATCAAAAATAGTAGTGCAGGCTTCCTTGTTTATGTCCGAATGTCAACTCAGTAGGCCAAAGCTGAACATGTGAGCAGCATGACGCATGCATGTAATGCTGACACAGNNNNNNNNNNNNCATCCCTGAGTCGCAAAGAGCTCAAATTGCTGATGGAGAAAGAGCTGTCTAGCTTTCTGAAGTCTCAGAAGGACCCTGCTGCCATAGACAGGATTATGAAGGATCTGGACTCTAATGGAGATGGAGAGGTGAATTTTGAAGAGTTTGTGTCTCTTGTGGTGGGCCTGTCCATTGCCTGTGAACAGCTCTACCAGAAGCAGATACAAGCAGCGGGTGTCAAAAAGCATTAAATAGCCAAACATGAAGGGAAAAAGGAATGTCTGTTTTTCTGTTTCGTCATTTTGTTAATATATTTTACGCTTTCAGCCACATGCCTCGATTTGAAGTTGTTACTACAGTTACACTGTATGTATGTATGTTTTGCAAAAGAGGATGTTTTGTCATTTTTGTTCAGTGATGTTCAAATTTACTTTTAGTTTTTATAGAGGGGTTTCTGTGCACCGTCATCACAGAGATGCACGTGCAACTAGGGGGCAGAAAAGCAATGTCTCATCATTACTGAGAGTTCATTTCTTAATATAATCGGTGGAGTCCGCGCTACCTAGGCTTTCAAAGTAATTGATGTTAGCCATTTCCTCACTGTCACACACCTAGCTAGCTGTCACACATCTCATGTCTTGTACAGTTTGTTTACAGTATCAATTTTCTTTCAAATGTGGTGGGTCGTGATGTAGCCTTGTCGTAAACATTTAGGATAGAAAGGCTCAACAACCAACAAAACCAGGTAAGTTCATACATTCATAGGGTATGTCAGGTTTTTATGATTAGCAAACTTAGTTGGACAATTTCATTCGAGACCTGATGATTAACGTTACAACTAGAATTGCATGCACCTCCAAGTACTGTTTAAAAACGATATAATATTCTTTGTGGGCTTCATTAATGGTGATAAATAATTCGGCAGAACAGATGTTGTAGTAGGCTACCTGCAGAGATATGCATCCACCTCTTTTCTGTTACCTCCTGTGAGGTGCATGCAGAATTCACCATAATGGGATGTTCTAAAATGTTTAACGTGAAAAAGCTTAACGTGGCTTACTTTACTAAGACAGTTATTAACAAACCAAACTTAGTAAACACCATACTAATAAAGCATACTATGTAGGCCTACAGAAAATCAGATGAACATAATAATATGAACAATAATATGAACGCAACTAAGCATTTTCCTCCCATAAAGAAAGCGCTTAACGTGGCTTAATGTACTAAGACAGTCACATTAAAAGACCAAACTTAGTAAACACTATACTAATAAAGCAAACTATGTACAGAAAAGCAGATGAACATAATAATATGAACAATAATATGAACGCAACATGTTTAATTAAGCATTTTCCTCCCATAAAGAAAACGCTTAACATGGCTTAATGTACTAAGACAGTGACATTAAAAGACCAAGCTTAGTAAACAACACTATACTAACAAAGCATACTATACAGAAAAATTGGTCATTAAGTGACGTTAAGCTTTTTCTTTATAACGGTTTTCTTATGGGAGGAAAACACAACGTGTAATCAAACGAATTGCGTTCATATTCTGGGCTCATCTGCTTTGCTGTACATAGTATGGTTTATTAGTATGATGTTTACAGAGTTCGGTTTGTTAATACCTTTGTCTTAGTACATTAAGCCACGTTACACATTTTTCCGGCATAAGACTCGTTAGTGGTTTTGCCCCCTGGATGCACACACATCCAGTATTGTTTGTATACAAGAAACTCGTCTATAAGTAGTATTTGCATTAGACACAAAAGATATCATTCTCAGAAGTCCTGTAAGTTCCACCATGGAAATAAACACTCAATGATTTTCCAGAT
>TU159629
TCGCCCTCATGTCGTTCCACACCCGTAAGATCTTCGTTCATCTTCGGAACACAAATTACGATATTTTTGATGAAATCAAAAATAGTAGTGCAGGCTTCCTTGTTTATGTCCGAATGTCAACTCAGTAGGCCAAAGCTGAACATGTGAGCAGCATGACGCATGCATGTAATGCTGACACAGNNNNNNNNNNNNCATCCCTGAGTCGCAAAGAGCTCAAATTGCTGATGGAGAAAGAGCTGTCTAGCTTTCTGAAGTCTCAGAAGGACCCTGCTGCCATAGACAGGATTATGAAGGATCTGGACTCTAATGGAGATGGAGAGGTGAATTTTGAAGAGTTTGTGTCTCTTGTGGTGGGCCTGTCCATTGCCTGTGAACAGCTCTACCAGAAGCAGATACAAGCAGCGGGTGTCAAAAAGCATTAAATAGCCAAACATGAAGGGAAAAAGGAATGTCTGTTTTTCTGTTTCGTCATTTTGTTAATATATTTTACGCTTTCAGCCACATGCCTCGATTTGAAGTTGTTACTACAGTTACACTGTATGTATGTATGTTTTGTCATTTTTGTCTAGTGATGTTCAAATTTACTTGTAGTTTTTATAAGTATTTGCATTAGACACAAAATATATCGTTCTCAGAAGTCCTGTAAGTTTCACCATGGAAATAAACACTCAGTGATTTTCCAGATTTTCTTTTTTTTTTTTTTGGTTCTCCTTTGCCTCCATATTGTTCAGGGCTGGATTCCACAATTCTATGCAAAATTATTAAGAAACCACATTGGACATTATTCCGATGAGACTCTTGGAGACGTTTTGAAGAGAGAATGCAAAACGTCCTTTACGATTGACTTAAGGGTGCAAACACACTGGAACTTAAAGACATCTTAGATTGAGTTCAAGAGCATCAAATACAATCTTAACATGGAATATTTTCCAGAACTACGCCTCTGAGAACTTTTGCTTGAATTGACATTTATATTATAAGGATCATTCTACAAAATGCGTTCTCTTTTTGTCCTTTATATGCACATTTGGCCATGATGTTAAACAGCTGATTAGATGTATCAGCATTAAATTAAAGCTTTAAAGCCATAAATCTCTTTACACAAGCACAAGCATTGGAATATAAAATTACTGATCGGCCATGTTTTACTTTTATGCATAATTATGTCCAA
>TU159630
TCGCCCTCATGTCGTTCCACACCCGTAAGATCTTCGTTCATCTTCGGAACACAAATTACGATATTTTTGATGAAATCAAAAATAGTAGTGCAGGCTTCCTTGTTTATGTCCGAATGTCAACTCAGTAGGCCAAAGCTGAACATGTGAGCAGCATGACGCATGCATGTAATGCTGACACAGNNNNNNNNNNNNCATCCCTGAGTCGCAAAGAGCTCAAATTGCTGATGGAGAAAGAGCTGTCTAGCTTTCTGAAGTCTCAGAAGGACCCTGCTGCCATAGACAGGATTATGAAGGATCTGGACTCTAATGGAGATGGAGAGGTGAATTTTGAAGAGTTTGTGTCTCTTGTGGTGGGCCTGTCCATTGCCTGTGAACAGCTCTACCAGAAGCAGATACAAGCAGCGGGTGTCAAAAAGCATTAAATAGCCAAACATGAAGGGAAAAAGGAATGTCTGTTTTTCTGTTTCGTCATTTTGTTAATATATTTTACGCTTTCAGCCACATGCCTCGATTTGAAGTTGTTACTACAGTTACACTGTATGTATGTATGTTTTGTCATTTTTGTCTAGTGATGTTCAAATTTACTTGTAGTTTTTATAAGTATTTGCATTAGACACAAAATATATCGTTCTCAGAAGTCCTGTAAGTTCCACCATGGAAATAAACACTCAATGATTTTCCAGAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU159628 False 254 TUCP 0.37 2 4737398 4774262
TU159629 False 254 TUCP 0.37 2 4737398 4774262
TU159630 True 254 TUCP 0.39 2 4737398 4774262

Neighbor

gene id symbol gene type direction distance location
CI01000027_04774573_04774740 NA coding upstream 2226 4774573 ~ 4775489 (+)
CI01000027_04768212_04770488 KRTCAP2 coding upstream 6517 4768212 ~ 4770687 (+)
CI01000027_04725469_04727486 EFNA1B coding upstream 48921 4723893 ~ 4728283 (+)
CI01000027_04713891_04717190 NA coding upstream 59845 4713780 ~ 4717359 (+)
CI01000027_04655825_04667764 NA coding upstream 109337 4654783 ~ 4667867 (+)
CI01000027_04835989_04851147 SNX27.L, SNX27B, SNX27, SNX27A coding downstream 56651 4835989 ~ 4851178 (+)
CI01000027_04860802_04872130 NA coding downstream 81464 4860802 ~ 4872566 (+)
CI01000027_04887494_04956477 KCNN3 coding downstream 107978 4887316 ~ 4957488 (+)
CI01000027_04978217_04987503 NA coding downstream 198879 4978217 ~ 4987503 (+)
CI01000027_05018992_05033275 NA coding downstream 238922 5018260 ~ 5034290 (+)
G140455 NA non-coding upstream 40536 4733708 ~ 4736668 (+)
G140597 NA non-coding upstream 68209 4708788 ~ 4708995 (+)
G140596 NA non-coding upstream 68698 4708225 ~ 4708506 (+)
G140587 NA non-coding upstream 84500 4692134 ~ 4692704 (+)
G140522 NA non-coding upstream 105727 4671107 ~ 4671477 (+)
G140475 NA non-coding downstream 45602 4824940 ~ 4825988 (+)
G140633 NA non-coding downstream 53674 4833012 ~ 4833260 (+)
G140454 NA non-coding downstream 93777 4873115 ~ 4874023 (+)
G140640 NA non-coding downstream 102742 4882080 ~ 4882366 (+)
G140641 NA non-coding downstream 103241 4882579 ~ 4882895 (+)
G138953 NA other upstream 1257139 3502072 ~ 3520065 (+)
G138915 NA other upstream 1290557 3484387 ~ 3486647 (+)
G138515 NA other upstream 3100344 1664408 ~ 1676860 (+)
G138436 NA other upstream 3269388 1506961 ~ 1507816 (+)
G138290 NA other upstream 3778023 995970 ~ 999181 (+)
G140440 NA other downstream 1079 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 269585 5050310 ~ 5055755 (+)
CI01000027_05069310_05070638 NA other downstream 290014 5067917 ~ 5070868 (+)
CI01000027_05071693_05072917 NA other downstream 292724 5071693 ~ 5073136 (+)
G140862 NA other downstream 933274 5712612 ~ 5712702 (+)
CI01000027_04551022_04551875 NA coding upstream 185405 4550712 ~ 4551993 (+)
CI01000027_04537765_04549872 NA coding upstream 187469 4537342 ~ 4549929 (+)

Expression


Co-expression Network