G140475


Basic Information

Item Value
gene id G140475
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4824940 ~ 4825988 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU159676
TCCTCTGAGTCCGCACTTTCGTGACGTAACGGCGCTTTGATTGCCGGGTGAAGTCCTCTGCGTAGCTCGCAAACTTGTGGGTTCAGCCAAGCAGCAATCTCCCCCAGTTTCTCTTGAAGCCAATAAGGAAGTGACTTAAACTGCGATTCATCGACTGGCCGCTAGGGACAGGCTCCAAAAGAAAGCAGAATCTCATTGAGTCCCATGTTAAAATGCCCAACTTTACAGCAGAAAAAAACATGTTTACAGCCTGGATCAAATTGTGGTTTTGGTCTATACAGCTAATTTTGCCCTGTGTATCCTCGCTCATGACTCCTCAGGAAGCTTTCTCACTCCTCGTTCCTCGCCTCCTCGTGGTGTAATTAGAGAACTGAGATGTCCTTCAAGATGGCTGAGTTCAATCGGTTTCCGGGTCATAGGATGGAGGACGGAGGAGCGAGGAAACGAGGAGGGATATTGAGAAGTAGCCCGTGTCTGCACCACATGGCGAGTCATAGGAAATGTCGTCTAGAGAGTAAAGTTTTGGCTCGTTTAAATGCGCACAGCATGTCGTTATAAATCAATACATTAAATGGTTAATGAGATAATAATGTGTTGAATAAATAAAGTGTTTAATAATAATAAAACACTTACTGTAGGTATTTCCTTGTAAAAGAGTTTTCTCTCGTCTGCTCCGCACCACGGGTCAAAGAATATATCTCTGAGGAAAGTTTAGGCGCGCACACACAGCACATATACCAACCTAAAACAAAAACCTTAATACTGTAAATCAAATATAAAACACTTCATCTCTGTGCTTCCCATCCTCGTTTGCTCAGCATCGCGGGTGAGCGAAAATGGCATCAGTGAAAAAGGTTTCTGTCAGCCCTTTAGGTGCGCACAGCACGTAAATGTCCTGGATGTACTGTATGTACCCCGTTAGAAATTTTACGTTGCCAAAATGTTTTCAGAATATCCCCACTGGATGTTGCCTAGTACGTTCCGAGACGGTCTTTTAAGAGACGTTCTTCTTTTAAGAAGTTTGAAGTCACCATTATAGAGGTAAGCGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159676 True 1049 lncRNA 0.44 1 4824940 4825988

Neighbor

gene id symbol gene type direction distance location
CI01000027_04777135_04777760 NA coding upstream 45627 4776487 ~ 4779338 (+)
CI01000027_04774573_04774740 NA coding upstream 49962 4774573 ~ 4775489 (+)
CI01000027_04768212_04770488 KRTCAP2 coding upstream 54253 4768212 ~ 4770687 (+)
CI01000027_04725469_04727486 EFNA1B coding upstream 96657 4723893 ~ 4728283 (+)
CI01000027_04713891_04717190 NA coding upstream 107581 4713780 ~ 4717359 (+)
CI01000027_04835989_04851147 SNX27.L, SNX27B, SNX27, SNX27A coding downstream 10001 4835989 ~ 4851178 (+)
CI01000027_04860802_04872130 NA coding downstream 34814 4860802 ~ 4872566 (+)
CI01000027_04887494_04956477 KCNN3 coding downstream 61328 4887316 ~ 4957488 (+)
CI01000027_04978217_04987503 NA coding downstream 152229 4978217 ~ 4987503 (+)
CI01000027_05018992_05033275 NA coding downstream 192272 5018260 ~ 5034290 (+)
G140435 NA non-coding upstream 2295 4736894 ~ 4822645 (+)
G140436 NA non-coding upstream 45602 4737398 ~ 4774262 (+)
G140455 NA non-coding upstream 88272 4733708 ~ 4736668 (+)
G140597 NA non-coding upstream 115945 4708788 ~ 4708995 (+)
G140596 NA non-coding upstream 116434 4708225 ~ 4708506 (+)
G140633 NA non-coding downstream 7024 4833012 ~ 4833260 (+)
G140454 NA non-coding downstream 47127 4873115 ~ 4874023 (+)
G140640 NA non-coding downstream 56092 4882080 ~ 4882366 (+)
G140641 NA non-coding downstream 56591 4882579 ~ 4882895 (+)
G140642 NA non-coding downstream 57421 4883409 ~ 4883610 (+)
G140440 NA other upstream 39280 4780417 ~ 4785660 (+)
G138953 NA other upstream 1304875 3502072 ~ 3520065 (+)
G138915 NA other upstream 1338293 3484387 ~ 3486647 (+)
G138515 NA other upstream 3148080 1664408 ~ 1676860 (+)
CI01000027_05050310_05055447 NA other downstream 222935 5050310 ~ 5055755 (+)
CI01000027_05069310_05070638 NA other downstream 243364 5067917 ~ 5070868 (+)
CI01000027_05071693_05072917 NA other downstream 246074 5071693 ~ 5073136 (+)
G140862 NA other downstream 886624 5712612 ~ 5712702 (+)
CI01000027_05757143_05758496 NA other downstream 930994 5756982 ~ 5758881 (+)

Expression


Co-expression Network