G140454


Basic Information

Item Value
gene id G140454
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4873115 ~ 4874023 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU159655
ATACCAACACTTGACTAGACTGCTTGAAATATATACATAATGTACATACAGATACATATGCACACAGATGTATATATAAGGTCTGTTGAACGAGTTTATACATATGCGTGTGTGTTTATGTATGTGTATATATTGTATGTATATATTTTGTAATGATTCGTAACTTTGAAATCCAATTTATTTTCTATCTTTTAATTTTTAGGATGTAATTTTATATGAGGTGTGTATGTTCTGTTTTGACTATCGTTGATGTGCATTTTGTTATACATGGGGGGGACTTGTGGTAGATAATGCATGCAGCCAAACACAGTCTACATTTTGAGTGGTGAAAGCTATAGCGGGTGGTTGAACGGCACAAACCAATCATATGCGCATTTGTGTGTGTGTGTGTGTACTTTTGTGGATCTGAACTGTTTCTTGGAATATTATTTTACTCTTTATATTGTAAGCTCAAGTCTGCATTGCTTGTTTAATGTGTTCAGACACTGCTAATTGATGAACTGCTTCAAGACTAAAGCAATACTAACATTCTGTTTTCTTCTTCCAGCAAATGTGAATCTGTATGCCTCCAAACATTTGTCATCAAACCATTGAAGTCTACTCCCAAATTCTTTTAAGACAAGTTCTGTTCTATTAAAAAAAGTAAAAAAGCATTTTCTTTCCATGAGCTGCAGATTAATGTCTTATGGTTTGCATTTCACTGAACGTGCGCTGGTTATAGTATAACTGTGATGGTATGTCTTTTCCCAGGATAGGTGGAAGGGAATATTTAGGTCAGAGTGTTGCTATTTACTTACACTTTCCTCTAATCAAGGAGAAAAAAGTTAAAATTAATATCTATATATGTGTATTTACACATACCCTGAAATATTAAATAATTATATAAATAATAATGTCAGACTGAAGTGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU159655 True 909 lncRNA 0.33 1 4873115 4874023

Neighbor

gene id symbol gene type direction distance location
CI01000027_04860802_04872130 NA coding upstream 549 4860802 ~ 4872566 (+)
CI01000027_04835989_04851147 SNX27.L, SNX27B, SNX27, SNX27A coding upstream 21937 4835989 ~ 4851178 (+)
CI01000027_04777135_04777760 NA coding upstream 93802 4776487 ~ 4779338 (+)
CI01000027_04774573_04774740 NA coding upstream 98137 4774573 ~ 4775489 (+)
CI01000027_04768212_04770488 KRTCAP2 coding upstream 102428 4768212 ~ 4770687 (+)
CI01000027_04887494_04956477 KCNN3 coding downstream 13293 4887316 ~ 4957488 (+)
CI01000027_04978217_04987503 NA coding downstream 104194 4978217 ~ 4987503 (+)
CI01000027_05018992_05033275 NA coding downstream 144237 5018260 ~ 5034290 (+)
CI01000027_05050310_05055447 NA coding downstream 176287 5050310 ~ 5055755 (+)
CI01000027_05061061_05063086 APOEB coding downstream 185716 5059739 ~ 5063414 (+)
G140633 NA non-coding upstream 39855 4833012 ~ 4833260 (+)
G140475 NA non-coding upstream 47127 4824940 ~ 4825988 (+)
G140435 NA non-coding upstream 50470 4736894 ~ 4822645 (+)
G140436 NA non-coding upstream 93777 4737398 ~ 4774262 (+)
G140455 NA non-coding upstream 136447 4733708 ~ 4736668 (+)
G140640 NA non-coding downstream 8057 4882080 ~ 4882366 (+)
G140641 NA non-coding downstream 8556 4882579 ~ 4882895 (+)
G140642 NA non-coding downstream 9386 4883409 ~ 4883610 (+)
G140643 NA non-coding downstream 9662 4883685 ~ 4883910 (+)
G140645 NA non-coding downstream 11596 4885619 ~ 4885818 (+)
G140440 NA other upstream 87455 4780417 ~ 4785660 (+)
G138953 NA other upstream 1353050 3502072 ~ 3520065 (+)
G138915 NA other upstream 1386468 3484387 ~ 3486647 (+)
G138515 NA other upstream 3196255 1664408 ~ 1676860 (+)
CI01000027_05069310_05070638 NA other downstream 195329 5067917 ~ 5070868 (+)
CI01000027_05071693_05072917 NA other downstream 198039 5071693 ~ 5073136 (+)
G140862 NA other downstream 838589 5712612 ~ 5712702 (+)
CI01000027_05757143_05758496 NA other downstream 882959 5756982 ~ 5758881 (+)

Expression


Co-expression Network