G140437


Basic Information

Item Value
gene id G140437
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4975727 ~ 4991547 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU159632
TTTTTTTTTTTTTTTTTTTATAAATGAAAAATGAACCTTTATTTAAAGTAAGAGAGGGAGAGAGAGACAGGTTTGGTGGTTATACACCTCACACGCTCTGTGTTCAGACAGCACTTTGACAGTTTTGTAGCACTCTTCTCGGTTTAGCTTTCATCTCCATTGCCCCATTATAGATCAGAAACACGGCCTCGTTATGGGCGGAGTCACTGAAATCCCTGTGGAGTGGCCAATCCTGTCTCTCCTCCCGTGGTCTCCCTCATCCTTGCATACTGGTTAATGAGAGACTAGTGCTGCTTTCTCCTGAACGAGCATCCTTCTGTGAGGCGTGCCTTTCCTCCGGTAGGCTGGCACAGCACTGTAGAGCATCCTACACATAAGACGACCGTCTGTGCGTGACTGAACACCGTAGTGATCTTATAACAGCCTGCAAAGAGAGAATGGCGAATAGTTTCAAACATACCATAATACAGAAGTCAATGTCCATTTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159632 True 489 lncRNA 0.45 3 4975727 4991547

Neighbor

gene id symbol gene type direction distance location
CI01000027_04887494_04956477 KCNN3 coding upstream 18239 4887316 ~ 4957488 (+)
CI01000027_04860802_04872130 NA coding upstream 103161 4860802 ~ 4872566 (+)
CI01000027_04835989_04851147 SNX27.L, SNX27B, SNX27, SNX27A coding upstream 124549 4835989 ~ 4851178 (+)
CI01000027_04777135_04777760 NA coding upstream 196414 4776487 ~ 4779338 (+)
CI01000027_04774573_04774740 NA coding upstream 200749 4774573 ~ 4775489 (+)
CI01000027_05018992_05033275 NA coding downstream 26713 5018260 ~ 5034290 (+)
CI01000027_05050310_05055447 NA coding downstream 58763 5050310 ~ 5055755 (+)
CI01000027_05061061_05063086 APOEB coding downstream 68192 5059739 ~ 5063414 (+)
CI01000027_05069310_05070638 NA coding downstream 76370 5067917 ~ 5070868 (+)
CI01000027_05071693_05072917 NA coding downstream 80146 5071693 ~ 5073136 (+)
G140645 NA non-coding upstream 89909 4885619 ~ 4885818 (+)
G140643 NA non-coding upstream 91817 4883685 ~ 4883910 (+)
G140642 NA non-coding upstream 92117 4883409 ~ 4883610 (+)
G140641 NA non-coding upstream 92832 4882579 ~ 4882895 (+)
G140640 NA non-coding upstream 93361 4882080 ~ 4882366 (+)
G140672 NA non-coding downstream 46998 5038545 ~ 5038798 (+)
G140674 NA non-coding downstream 47694 5039241 ~ 5039487 (+)
G140683 NA non-coding downstream 110844 5102391 ~ 5108232 (+)
G140685 NA non-coding downstream 118272 5109819 ~ 5114502 (+)
G140684 NA non-coding downstream 126921 5118468 ~ 5164862 (+)
G140440 NA other upstream 190067 4780417 ~ 4785660 (+)
G140436 NA other upstream 196389 4737398 ~ 4774262 (+)
G138953 NA other upstream 1455662 3502072 ~ 3520065 (+)
G138915 NA other upstream 1489080 3484387 ~ 3486647 (+)
G138515 NA other upstream 3298867 1664408 ~ 1676860 (+)
G140862 NA other downstream 721065 5712612 ~ 5712702 (+)
CI01000027_05757143_05758496 NA other downstream 765435 5756982 ~ 5758881 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010684 rps27.2 coding NC_007127.7 CM002900.2 23788616 ~ 23800484 (-)