XLOC_008592 (dre-let-7c-1)


Basic Information

Item Value
gene id XLOC_008592
gene name dre-let-7c-1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 29795823 ~ 29795929 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017170
CTGAGAGTGTGTGCATCCAGGCTGAGGTAGTAGGTTGTATGGTTTAGAATTTTGCCCTGGGAGTTAACTGTACAACCTTCTAGCTTTCCTTGGAGCTCACAAGCCAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000081442

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017170 True 107 miRNA 0.48 1 29795823 29795929

Neighbor

gene id symbol gene type direction distance location
XLOC_008591 dre-mir-99-1 coding upstream 157 29795583 ~ 29795666 (+)
XLOC_008589 nrip1a coding upstream 82464 29662401 ~ 29713359 (+)
XLOC_008587 NA coding upstream 152013 29553043 ~ 29643810 (+)
XLOC_008588 NA coding upstream 198706 29595584 ~ 29597117 (+)
XLOC_008586 gdpd5b coding upstream 311311 29387910 ~ 29484512 (+)
XLOC_008593 dre-mir-125c coding downstream 5039 29800968 ~ 29801052 (+)
XLOC_008594 NA coding downstream 151579 29947508 ~ 29954095 (+)
XLOC_008595 nufip2 coding downstream 331042 30126971 ~ 30137780 (+)
XLOC_008596 nlk2 coding downstream 361673 30157602 ~ 30301528 (+)
XLOC_008597 lyrm9 coding downstream 514914 30310843 ~ 30311953 (+)
XLOC_008463 BX663520.1 misc upstream 8543541 21252191 ~ 21252282 (+)
XLOC_008583 BX537104.1 non-coding upstream 524356 29161656 ~ 29271467 (+)
XLOC_008574 BX088540.1 non-coding upstream 1167921 28598647 ~ 28627902 (+)
XLOC_008600 NA non-coding downstream 562502 30358431 ~ 30380319 (+)
XLOC_008601 BX649247.1 non-coding downstream 658523 30454452 ~ 30454566 (+)
XLOC_008602 NA non-coding downstream 784589 30580518 ~ 30580827 (+)

Expression


Co-expression Network