G140685


Basic Information

Item Value
gene id G140685
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5109819 ~ 5114502 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU159895
AGCAAACAGTGTTGCCAATTTAGCAATTTTTTTCGCTAAATTTAGCAACTTCCCCACCCCTTTTGAGACTTTTTTCAAAAACCTAGCAACAAATCTAGCAACTTCTTGGACAAACCTTATCTAGATTCTGTGACTCGCTAGACGTCATCTAGCGACATTTAGCAATCAGTTTTAGCTACTTTCAACTGAAAGCAATTGGCAACACTGCCTGCAAATGTTGGATTTCATGGTCTGTGCTACTTACACATCCTTCTCGTCCTTTTTCCCACAGCTCAGCTTGCCCTTCTTACTGAGGAAGAAGAGCAGAGCCACCATGATGAGAAGCAGCAGAACACACACCACCACGGCGATCACGACCGCACTCGAACCCCCCTGCTGTTTCTCCGCTGAGAAGAGCGAACGAGAAAAGAGTTGATGAGAAGTTAATGGTTAATAGTGAGTGTGAAGAAGTAACACTTTTGGGTGGGAGAGGAAGAGAAAGGGGGACACAGAGGGGGAACGGGCGTGTGAGGAGGGTGGGAAGGAAGTAAACCAGAACAATAAGCAATTGTTCTTATGTTGACAGTAAATGCGAGACCCATAAGGTAATTGTCCCTAAATAAGGTCACAGTTTGAGAAATGATATACAAACACACACACACACACACACTCTCACAGCTGTAAGCAAACTAATAATCACATACACACATCATTTTATTCACACGCAAAGACAGAAAAGCAGCAGGGGTTATACAGACCTGTTTTAAACACGGGGTTTCCTTCGAGCAGCATTATGGGAAAGAGAAAGAGTCCCATTGAACAGCACACGTGAAAAAAACACTCCAGCATTAATCCACATACACACACATAACGAGGCCCATCAATGAGATGAAGACGAACACACACACACACACACACACACACACACTCTCTAAAGTGACCGCACAAGCTAAACATTTGACAGCACAAAGATAGAAGGAAAGGACATCGGTATTAAGTGACAAACACCCCAGACACAGAGAGGAAGGAAAGAGAGGAAGGTAAAATAGAACAGAATCCTTTATTGTCCCAAATAAGGGAAAAGTTAAAGGTGCAGCATCAACAAAATAGAGGACAGACATCATACAAAGGTCACATACGTAATACAATATACAATATACACAGTGTTTGGTAACAGTACATAATATACAGTGTAAAGAGCTGAAGAGTTAGATCACGGAGTATGTACAAAGAAAGAGTCCTGAGAGGAAGAGGAGGAGCAGAGAGAGCTGGGACAAGTGTCTACCTCGGTTAGCGGCATTGGCATCTGGGCCATTGTCTGGATCTGCACAGAAGAAATAAAAGAATGAGGTTTAGAGAACAGCTAACATTTTGCACATTAATCTGGGTCTGTTGAGATACAAGGTATGTTCGGAATTGCATACTACATAGTATTAAAACGATTTGCATTAAGTATGCAGAAGCCTCATGCTCATTTAAATTCTGGGCTGAAAGTTTGAATTGTTTAAATAGAGATTTTACATGTTATTTCTAATTGTATCTTAAAAGTTAAATTGTTAAAATTTTAGAGGTCTACAGATTCAATTTACTGTTCAAAAGTTTGGGACACTTTTTAGATTTTAAATAAATGCTGTTCTTTTGTACTTTCTATTGCTAAAAAAAAAAAAAATCCTGAAAAAAATCACGTGTTTCACAAAACTATTAAGCAGCACAACTGTTTTCAACATTGATTTTAATAAGAAATCTCTCTTTAGCATCAAATCAACATATCAGTATGATTTCTGAAGGAGCAATGGAGTAATGATGCTGACCATTCAGCTTTCCCATCAGAGAAATATTATCAACATTTTAAAATATATTAATTCAGAAAACGGATGTTTTAAATTGTAATCATTTTTCACAATATTTCTGTTTCTACAGCACTTTTGATCAAATAAATGCAGCCTTGGTGGGCATAAAAGACTTCTTTCAAAAACGTTTTAAAAAAATCTAACAGTTTCCAAACTTGATCAGTAGTGTATAAAACGGACATGATTCTGAAGTGTCTACAAGGTCGATGCAACTAAAGCACACAAAATCCCTGATTTTTGAGATCATCTTGACTAAAATTCTCACATTCTTACACAAAATGGGATAATAAAAAAACTTTATAATAACAGTATTCATATGTAACTGAGATATCTGGTTGCTACAGGCTGAGTTTACCATACAACAATAAGGTCATGTGACTGTGTACCAAGCACTGTCTGAAATGTATATCCCTGCATACTAGAAGGCGGTGTACAGCATATGCTGGGGTTCTTTTTGTGCAACCCTGCTGCTGGTTAATATGTATCAAACTAGATAAATTTGGAAGTTTCTATCTGAGATTTACCCAGTGGGTTATTTTTAACCCAGTCATTTTAAGATCGTTGTATCCCAATCCTAACGTTGCCCCAGTTTGTATGAGTAGGAAGCACTAACCTGATTTGTCGAACACCTCGAATTTCCTTTTGGCTTTTCCATGATCATTGTATGCTTCACACACTACACCATTATTCGGATCCACAGCTGTGGCCTTAAGAGTGACCGTGCTGATCACCCTATTCCCCACTACTGTCACTGACTACACACAGACAGATGAATAACATCACAAAATACAATGAATACAGCTTTCTCTGATGTAAAGATCAAGTTCAAACCTTAACTATTTGGAGCACACACACGCACCTCTTTACCAGAAGGTGTCCAGGTGAACTGTGGAGCAGGATAGCCAAGGGCAGAGCAGTTGAGAGTGACCTCATCTCCCTTAGCAAAAAAACCATCCACTGAAGCATCAATCTCAGGTTGACCTTTAAAACAATAGCATATGTTTATTGGAAGTTGCCAATCTTTGAGTTCATTTACTTTTAGCCTGTCTTTGAGTTGTAAAATTCCTTGATATCTTTGTTGGCCACTCAAAGAGATGTTAAAATAAACCTACTACCAGATCATCTTAACAAATTTGACATCTGCTTTTTTTGAAGATTCAGTCCATGGCTAGAGGTGTTTGATTATAGGTTTTTCTGAGTCGACTCCAATTCCCAACTCCCACTGTAGAAGTCAATGGAATCGACTCTCGGAATCAATTTACTTTAAGTCAAAACATGGTCGGCAATAAAAGAATACAAGATTGCCGTTATTATTGCCACAAAATGTAGGCTTTTCTTTTTTTCTGACACAAAGCCTAAAACTACCCTTTTTAAAACAACAAAAAATTTAGCGTGACTGGCCAAATTAGTCCAGTTTACAGATTAAATTACCTTGAAATTGGGTGAGGGTGAAACCACAAAGCTAATACGGAGGTATGTATATATTTCCAACGTACATGGCTGTTATTTTATTGTACATAAGCTACAAGTAGGATAAAACTATGTGACTGTGACGTTGTTTCTGTGACAGCTTCAGCTCTCATGTACAGAACGATTTCAGACACAGCAAGGGAGAGTCAATTCCTGTGCTGGAGTCGACTCCGACACTCCCATCACTATCCATGGCTCTGAAACAGTAGCTACATGTACATGTACAGTAGCCATGACATCATATTCCATGAACACAGTACCAGGGGAGAATTTATGTACCACACTGTAAATGCCACACCATCCCTTCGTGGAAACCAGGAAGGTGTGAACTACACCCATGAATACTTTAAATGCCATGAAGGCGTACAGAACAAAATCAGGAAATCAACTATAGAATGAAAATTTTCCTGAATGCACAGATAAGATAAATGACACATTGCCTAGTGTTATGTGTCACATACTGCAGGACGACAGTGTTTATCAACTCAGAGTTTTATTATTGGAATTAGTTCAACAGTAACTGCTCACACTGTTAGTGGCCTTGAAAATATATCTTCCATTGATTTCCACCACAGGCATTTCAGGAAGTTGCCTTGAACCAAATGAAACTGTTCTGAGATGATTCACAACATTTTATTTGAAGCAAAAAGTCTATGAGGATTAGAAGACGGATGAGTTTTTTGTTCTATTGATGCAGTTTATTCTTCCAAAACAACTCTAATTAGGGTGACCAGATTTCTCATGGTGGAATATGGGACAGAGAGCAAGGGGTGAGCAATATGACCATGATATTTTTATTTCACTATATATATAGTAATATAATGTAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159895 True 4127 lncRNA 0.38 2 5109819 5114502

Neighbor

gene id symbol gene type direction distance location
CI01000027_05082223_05082843 APOC2 coding upstream 26626 5081616 ~ 5083193 (+)
CI01000027_05074328_05075547 NA coding upstream 34079 5074328 ~ 5075740 (+)
CI01000027_05071693_05072917 NA coding upstream 36707 5071693 ~ 5073136 (+)
CI01000027_05069310_05070638 NA coding upstream 39167 5067917 ~ 5070868 (+)
CI01000027_05061061_05063086 APOEB coding upstream 46405 5059739 ~ 5063414 (+)
CI01000027_05157946_05159188 NA coding downstream 41631 5156133 ~ 5159246 (+)
CI01000027_05205628_05209568 NA coding downstream 90585 5205087 ~ 5210170 (+)
CI01000027_05272101_05283619 NA coding downstream 155829 5270331 ~ 5283941 (+)
CI01000027_05398796_05408689 NA coding downstream 283906 5398408 ~ 5410067 (+)
CI01000027_05444238_05445884 NA coding downstream 329381 5443883 ~ 5446211 (+)
G140683 NA non-coding upstream 1587 5102391 ~ 5108232 (+)
G140674 NA non-coding upstream 70332 5039241 ~ 5039487 (+)
G140672 NA non-coding upstream 71021 5038545 ~ 5038798 (+)
G140437 NA non-coding upstream 118272 4975727 ~ 4991547 (+)
CI01000027_04978217_04987503 NA non-coding upstream 122896 4978217 ~ 4987503 (+)
G140684 NA non-coding downstream 3966 5118468 ~ 5164862 (+)
G140680 NA non-coding downstream 83124 5197626 ~ 5201086 (+)
G140734 NA non-coding downstream 88694 5203196 ~ 5203505 (+)
G140748 NA non-coding downstream 109125 5223627 ~ 5239327 (+)
G140837 NA non-coding downstream 252532 5367034 ~ 5367304 (+)
CI01000027_05050310_05055447 NA other upstream 53880 5050310 ~ 5055755 (+)
G140440 NA other upstream 324159 4780417 ~ 4785660 (+)
G140436 NA other upstream 330481 4737398 ~ 4774262 (+)
G140862 NA other downstream 598110 5712612 ~ 5712702 (+)
CI01000027_05757143_05758496 NA other downstream 642480 5756982 ~ 5758881 (+)
G140924 NA other downstream 848704 5963206 ~ 5965326 (+)
G141052 NA other downstream 1156865 6271367 ~ 6271600 (+)
CI01000027_06706050_06708485 NA other downstream 1591875 6705983 ~ 6708513 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location