Gene
RNA
| Item | Value |
|---|---|
| gene id | G140739 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000027 |
| NCBI id | null |
| chromosome length | 10680226 |
| location | 5370761 ~ 5376536 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU159952 | False | 3074 | lncRNA | 0.38 | 3 | 5370761 | 5376536 |
| TU159953 | True | 849 | lncRNA | 0.39 | 2 | 5370761 | 5376536 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000027_05272101_05283619 | NA | coding | upstream | 86820 | 5270331 ~ 5283941 (+) |
| CI01000027_05205628_05209568 | NA | coding | upstream | 160591 | 5205087 ~ 5210170 (+) |
| CI01000027_05157946_05159188 | NA | coding | upstream | 211515 | 5156133 ~ 5159246 (+) |
| CI01000027_05082223_05082843 | APOC2 | coding | upstream | 287568 | 5081616 ~ 5083193 (+) |
| CI01000027_05074328_05075547 | NA | coding | upstream | 295021 | 5074328 ~ 5075740 (+) |
| CI01000027_05398796_05408689 | NA | coding | downstream | 21872 | 5398408 ~ 5410067 (+) |
| CI01000027_05444238_05445884 | NA | coding | downstream | 67347 | 5443883 ~ 5446211 (+) |
| CI01000027_05461577_05471900 | YWHAZ, YWHABA, YWHAB, 143B1, YWHABL | coding | downstream | 83057 | 5459593 ~ 5472892 (+) |
| CI01000027_05483140_05487852 | NA | coding | downstream | 106338 | 5482874 ~ 5488587 (+) |
| CI01000027_05489565_05492924 | NA | coding | downstream | 113029 | 5489565 ~ 5492969 (+) |
| G140838 | NA | non-coding | upstream | 3130 | 5367383 ~ 5367631 (+) |
| G140837 | NA | non-coding | upstream | 3457 | 5367034 ~ 5367304 (+) |
| G140748 | NA | non-coding | upstream | 131434 | 5223627 ~ 5239327 (+) |
| G140734 | NA | non-coding | upstream | 167256 | 5203196 ~ 5203505 (+) |
| G140680 | NA | non-coding | upstream | 169675 | 5197626 ~ 5201086 (+) |
| G140832 | NA | non-coding | downstream | 34746 | 5411282 ~ 5412302 (+) |
| G140843 | NA | non-coding | downstream | 35891 | 5412427 ~ 5412735 (+) |
| G140933 | NA | non-coding | downstream | 102426 | 5478962 ~ 5479215 (+) |
| CI01000027_05542184_05551414 | NA | non-coding | downstream | 160079 | 5541415 ~ 5553150 (+) |
| CI01000027_05563090_05579132 | NA | non-coding | downstream | 183815 | 5560351 ~ 5579146 (+) |
| CI01000027_05071693_05072917 | NA | other | upstream | 297625 | 5071693 ~ 5073136 (+) |
| CI01000027_05069310_05070638 | NA | other | upstream | 299893 | 5067917 ~ 5070868 (+) |
| CI01000027_05050310_05055447 | NA | other | upstream | 314822 | 5050310 ~ 5055755 (+) |
| G140440 | NA | other | upstream | 585101 | 4780417 ~ 4785660 (+) |
| G140436 | NA | other | upstream | 591423 | 4737398 ~ 4774262 (+) |
| G140862 | NA | other | downstream | 336076 | 5712612 ~ 5712702 (+) |
| CI01000027_05757143_05758496 | NA | other | downstream | 380446 | 5756982 ~ 5758881 (+) |
| G140924 | NA | other | downstream | 586670 | 5963206 ~ 5965326 (+) |
| G141052 | NA | other | downstream | 894831 | 6271367 ~ 6271600 (+) |
| CI01000027_06706050_06708485 | NA | other | downstream | 1329841 | 6705983 ~ 6708513 (+) |
