G140920


Basic Information

Item Value
gene id G140920
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5602529 ~ 5608115 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU160139
CAAATTATAACTAAAGGTTTTCTTAACTTATGGGGTTTATTGCAAGCTTGCAACTGACATCTTGACTTGTGCATGTTTGTATACAAAACCAGCTCTGAATAGACTATTGCAAAATCCCTGTCTCTGATTCATGTCATTTAGGCTGTGGGCTCAAATTGACTGTCTTGTGTACACCATAATGAGCCATTTGACAGACAGAGTGTGATTTGGAGATTTTTATGCAAACAGGCGTTATAGAGTCACATATACACTGCTCAAAAAAATGAAAGGAACACTTTTTAATCAGAGAATAGCATCAAGTCAGTTAAACTCCTGGGATATTGATCTGGTCAGTTAAGTAACAGAGGGGGTTGTTAATCAGTTTCAGCTGCTTTGGTGTTAATGAAATTAACAACAGGTGCACTAGATGGGCAACAATGAGACAACCCCCAAAACAGGAATGGTTTTACAGGTGACATTTTTTCCCTACTTATCTTTTCTGACTGTTTTTCACTAGTTTTGCATTTGGCTAGGGTCAGTGTCATTACTGGTAGCATGAGGCGTCACCTGGACCCTACAGAGGTTGCACAGGCAGTCCAACTCCTCCAGGATGGCACATCAATACGTCCCATTGCTAGAAGGTTTGCTGTGTCTCCCAGCACAGACTCAAGAGCATGGAGGAGATTCCAAGAGACAGGCAGTTACTCTAGGAGAGCTGGACAGGGCCGTAGAAGGTCCTTAACCCATCAGCAGGACTGGTATCTGCTCCTTTGTGCAAGGAGGAACAGGATGAGCCCTACAAAATGACCTCCAGTAGGCCACTGGTGTGAATGTCTCTGACCAAACAATCAGAAACAGACTTCATGAGGGTGGCCTGAGGGCCCGACGTCCTCTAGTGGGCCCTGTGATCACTGCCCGGCACCGTGGAGCTCGATTGGCATTTGCCATTGAACACCAGAATTGGCAGGTCCGCCACTGGTGCCCTGTGCTTTTCACAGATGAAAGCAGGTTCACCCTGAGCACGTGACGGACATGAAAGGGTCTGGAGAAGCCGTGGAGTACGTTATGCTGCCTGTAACATTGTTCAGCATGACCGGTTTGGTGGTGGGTCAGTGATGGTCTGGGGAGGCATATCCATGGATGGACGCACAGACCTCTGCAGGCTAGACAATGGCACCCTGACTGCCATTAGGTATCGGGATGAAATCCTTGGACCCATTGTCAGACCCTACGCTGGTGCAGTGGGTCCTGGGTTCCACCTGGTGCATGACAATGCCCGGCCTCATGTGGCGAGAGTGTGCAGGCAGTTCCTGGAGGATGAAGGAATTGATACCATTGAATGGCCCCCACGCTTACCTGACCTAAATCCAATAAAACACCTCTGGGACATTATGTTTTGGTCCATCCGATGCCACCAGGTTGCACCTCAGACTGTCCAGGAGCTCAGTGATGCCCTGGTCCAGATCTGAGCAGTTTACCTGTGCACAAAGAGACCACATTAATAACCAACACAACAACAGTAGCATTCTGTGTTTATTAAAGCACTTGAAAGAAATATAAGAGTTTGAGTTTAGATTTATGACCTAAACATTCAGACATGCCTTTTGCAACATATGAATTCTCCAATCTGTTGGTTCTTTGTGGGTTCACATTTATAATTAAATACAGAAACATTTCAAAACACATTCGAAAGGGTTTGTGACTGCTGGTAATAATGATTTCCAACCATTGCTCCATTCTCACAGCTGTCCAGGTCAAACACTTCATCCTGAACCCCAGAGAACTCTAGACACAGAAAAAGGGTCACACACTGACTGCCAGAATTCACAATACACCCACACAGCAACGTGCAAGTCTCTGCTACGAGGGCGTATAATAAATGAAGGCACGTAGGGGGTTCCAGGGCCTGTCCTCATCTCTGTAGGTTAATTGGGTGTGTCTTAGAAGAAGCCGTCCGGTTTCTGTAACCTCCATGGAAAAAAGGGGTGGAAGGGGAATTGTAATCTCATAGCACTTATCCACCTACACAGTACCCTTCTACAGCTTGGACTGATTATGATTTTCTCAGAGCTGTGTGTGCAGTTTTTGACCAATGTGAATATGTTGTCCAAGCAAGCTTATCTGTTGATGTTATTATCTTTTAGATTAACCATTGTTATACATTATTTTTGCTAGTGCAGATGTATATTGTGCATTAAAGACAACTAGAAGACCACTACATTTTGTGAGTTTGTAATGAAAAAGTTCTATAAACCATCATACGAAATTTAATCCATTCCAGTTGACAAAAACTGAAAGTTCCACATCATAACACGTTTACCAAGTTGCGTTTAGTGTTTAAAGCTATACGTTTATTATTATAAATGCATATAATTTATTAATCATTCTATGATTATAACATGATTATTCATAACTATTCTTTACACAAGCTTAGGCCATGGTATTAGACGAGGTTGTTGGTGATCTGATCACAAGCGCTCTGCTGAGATGTGCCATTTCCACCTGGTATTAACATGCATTTCCCGGGATTCCTTGTGATTGGATTTTGTTAAGACCCCTACTTATTTTGTCATAACCTACATCACATTCACAGGAGTGAAACAAATATGACTGAAAGCCATATTCTGAACGAACGCAAAAGGAGACGAATTTAAATTGTAAAGTGTAAAGTGAGCAACTCAGATTTCGATTGTCATCCATGTTTTGATACAACAAAACACACTTGATGCGCTTCCTCAAAAGGTGTCCATTAACGGTTACTTAGTTGAGAAGGTGGTGCTTTACTGAATAGTGTTTCCACTGCAAATGCAATGTAGTCACACGTTTTTCTTTCTGCAGACATGCAGACAAACCCAATGCATGGCAATGGGACGCAGCATCTCATTCCCCTTTTCACGGAACTAGGTTTACATATGTAACCTAGACGTTCCCTTTTGAAGTGGAACTTCAACGCTGTGAGTTGACGCTATGGGAAACCAATACCCACTAGGCTATGCTTAGGGGATCCCTGCCTCACTAAGCTGTGGATATGCACAAACATAGTGGGCATAGCATAGATTGACTCTACAGATCACTTAGCAGAAGTCAGAGTGCGTCTACCCTCAGGGCGCAAATTGCGACTCATTGATACTGAAATTGCGACAGCTAAGTGGAGCCACTACCTAAGCCCAATGTTTTTCTCTAATAGCAAGAGAAGTTATCCAAGCTTCTATGCTCTATTGCAAGGGAAGTCCCTGCCTTTACAACCTTCCTCCCTCCCTTGCAAGGCAGGCAAAAAGCCTAAAAGTCCCCAAGAGCAAAAGCTCTAATAAAGTGCTAGCTATGTCAATACTTTGACAAAGGCCTTAGGGAGTAATTCAACTACAACCTTCGATTTACCAGTACTTCCAAAGGGGGAGAATATAACCTTCACTTCATCTGAAGGGATGCAAATATGAGGGTGTCATAGAATAAAAGCCATAAAATCTTGCCATTGCAACTCAACCCCTAGGGAAACCACAGGGGAGCTTAGGCTCTCTTACCCCAGAGTCATAGAGAAGAGCTCTCATCCGTACTTGAGCAAAGTTCTTCTTCAGGAACCACAAGAAGACTCCATGCACTCATCTGATTATAGAGTGCTACCATAACAAGTAGGGAGGCCACCAGGCAAACTGCCTTGACTTGCCAGGTTCTCCAAGCATGAATCAACAAGAGATTTTGCACAACACCCAGCAATAGGGGAGCATATGGCCCGACTCAACCATAGTTGAGGAGGGGACAAACGAAACTAAGGTAATTTTGTGAGTTTGTGAGAATTGAATGAAATTGAGTACCTAACACAATTCCGTTCATCCTGCTCTACCCCAAGGGTTATCTTAAGAGCAGTTTAAGAAAGAGAGCATGCAAAGTGTTAAAAACCTTAGTAATTAGCCCTTCAGGTATCATTGGTTCTAGCGTGTCAAACGCACCCTGGATCTTTCCTGTTATTTAAATGATTCAATCGTTTATGTATGTGCATTGATCAGTGTTAAAAGTAAACGAAAAAATTATTTTGATCATTTGAATGATGCACTCACCTGTTGATCTCTTAATGCCCTGTACAAGTCAGGATGGTCAAGCAACAGATGCTTGGCAAGGTTTAATGTGTTTCCACCCCCATGGTTGGGGGTAGGGCAAAGAAATGTTTCTTCTATCTCTGCTAATATTACTCCTTCAATCCTCATGGCCCCCAGAGAGGGATATATCCCTCAAGAAAGAATCAAGCAAGAACAAAAGCTCTTACAGTGAATGCATTGCTCCAATTTTCCAGATTTTCGTCTTACACAAGCATACAAACAAAGCGGCTCCTGAAGACAAAAATGTTGATGACGTGTCTTGCAGGTGGCCTCTTATACTCACGGGCGCTCCACTTGTGACTGCTGTCGGCCAATAAATTGGTGTTTGTTACACATATTCAGACACCTGATACACTGAGGGTGTTCCCCATAGCATCAACTTCATGACGCAGCGTTGAAGTTCCACTTCGAAAGGAAACTTTAACACTTTCATAGTCGTATGTAACAAAAAGGTCAAATTCTTAAAGTAAAACAACTTCTTCAAAACCCTTAGGTGTAAGAGCATAAATGTAGCTATTTGATAAGCTTGTAGCCTATTTGACGAGCAAATTTAAATAATATTTGCACATATATTAGCTCTTTGGGATGTGACCTAAGCATATTGTTTGTATTCCAAAATAAGCAGAACACAAAACTGTGTCTGCTCATCCCAGTGTTTAGTTTGGCCAAAAGGAGCAGTTCTGACAGAAACCTCTTTGTAGATTGTGTCAGCATTGACTGTTTCCAGAACCTCTTTTAAAATTCATAAATATTTGGCCTGGATTATGTGGATCTGATTCAGCTTTTGTCTTGAGATCTTTACAATGACATGATTACCAAAAATGATATGGTTAATGTATCTGTGTCATATAAATAATCTCAAGCCTCTTGGGAACCATCCTCAAAATATATATTTATAGTTACAAGCTGCTGGTCATGTTTTGCCTTGAATACAACTGGACAAACCAAGGGAGTCACCATGACGCATATGGCAGCTGTGACCACAGTAAATCGTCAACAGATGAAGTGAGTAGACTTGCCATATAACCTGTTGTCCTGTTAAGAAAAATAAAACAGACCTGTGCATAATTTTCACTTATTTTCCGGTATTTGAACCTCAGGCAAACATCTGCTCGGCCCAGTGAAGAAAACACAATATATTTTGGGAAAACCAGATAAAGAGTCACTGCATACTTTGTATGTTGGAAGATGGAATTCTGGAAGCATAATGGTTTGGAGGCTTTCAGATTTGACTGTGTCACTATATGTCACTATCTGAAACATATTAGAACATACAATGATAATAACTACATATTATAATGCACTGTAAAAAAAATAGATCTAGTAAAAATGCTCAAATTATTTACTTGATTATTGTATTTCTGTGATTACTTACTATTCTAGAAGTTTCAGTCAACTTAATGCTTTCAGGAACAGAAAGCAATATACATCTCAATGTAGTCTTTATGAGGAAGAAATGGTTTTGTGATTCATTCACACTCTTCCCAGCCTGCATGGGGGGATGCATAAGGGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU160139 True 5587 lncRNA 0.42 1 5602529 5608115

Neighbor

gene id symbol gene type direction distance location
CI01000027_05563090_05579132 NA coding upstream 23383 5560351 ~ 5579146 (+)
CI01000027_05542184_05551414 NA coding upstream 50483 5541415 ~ 5553150 (+)
CI01000027_05489565_05492924 NA coding upstream 109560 5489565 ~ 5492969 (+)
CI01000027_05483140_05487852 NA coding upstream 113942 5482874 ~ 5488587 (+)
CI01000027_05461577_05471900 YWHAZ, YWHABA, YWHAB, 143B1, YWHABL coding upstream 129637 5459593 ~ 5472892 (+)
CI01000027_05612215_05613339 FPR1 coding downstream 3139 5611254 ~ 5613416 (+)
CI01000027_05624635_05626386 NA coding downstream 16411 5624526 ~ 5626605 (+)
CI01000027_05654573_05657504 NA coding downstream 46458 5654573 ~ 5657504 (+)
CI01000027_05657678_05659351 NA coding downstream 49563 5657678 ~ 5659351 (+)
CI01000027_05659449_05662678 NA coding downstream 51334 5659449 ~ 5662957 (+)
G140929 NA non-coding upstream 34876 5566567 ~ 5567653 (+)
G140933 NA non-coding upstream 123314 5478962 ~ 5479215 (+)
G140843 NA non-coding upstream 189794 5412427 ~ 5412735 (+)
G140946 NA non-coding downstream 1758 5609873 ~ 5610178 (+)
G140858 NA non-coding downstream 11541 5619656 ~ 5681459 (+)
G140894 NA non-coding downstream 142116 5750231 ~ 5753375 (+)
G140950 NA non-coding downstream 213695 5821810 ~ 5822331 (+)
G140869 NA non-coding downstream 298681 5906796 ~ 5911149 (+)
CI01000027_05071693_05072917 NA other upstream 529393 5071693 ~ 5073136 (+)
CI01000027_05069310_05070638 NA other upstream 531661 5067917 ~ 5070868 (+)
CI01000027_05050310_05055447 NA other upstream 546590 5050310 ~ 5055755 (+)
G140440 NA other upstream 816869 4780417 ~ 4785660 (+)
G140436 NA other upstream 823191 4737398 ~ 4774262 (+)
G140862 NA other downstream 104497 5712612 ~ 5712702 (+)
CI01000027_05757143_05758496 NA other downstream 148867 5756982 ~ 5758881 (+)
G140924 NA other downstream 355091 5963206 ~ 5965326 (+)
G141052 NA other downstream 663252 6271367 ~ 6271600 (+)
CI01000027_06706050_06708485 NA other downstream 1098262 6705983 ~ 6708513 (+)

Expression


Co-expression Network