Gene
RNA
| Item | Value |
|---|---|
| gene id | G140858 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000027 |
| NCBI id | null |
| chromosome length | 10680226 |
| location | 5619656 ~ 5681459 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU160077 | True | 1690 | lncRNA | 0.42 | 7 | 5619656 | 5681459 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000027_05612215_05613339 | FPR1 | coding | upstream | 6240 | 5611254 ~ 5613416 (+) |
| CI01000027_05563090_05579132 | NA | coding | upstream | 40510 | 5560351 ~ 5579146 (+) |
| CI01000027_05542184_05551414 | NA | coding | upstream | 67610 | 5541415 ~ 5553150 (+) |
| CI01000027_05489565_05492924 | NA | coding | upstream | 126687 | 5489565 ~ 5492969 (+) |
| CI01000027_05483140_05487852 | NA | coding | upstream | 131069 | 5482874 ~ 5488587 (+) |
| CI01000027_05684713_05689894 | NA | coding | downstream | 3136 | 5684595 ~ 5689916 (+) |
| CI01000027_05691123_05698421 | NA | coding | downstream | 9558 | 5691017 ~ 5698620 (+) |
| CI01000027_05701396_05711410 | NA | coding | downstream | 19417 | 5700876 ~ 5711460 (+) |
| CI01000027_05711573_05714490 | NA | coding | downstream | 30018 | 5711477 ~ 5714573 (+) |
| CI01000027_05719979_05720814 | NA | coding | downstream | 38444 | 5719903 ~ 5721334 (+) |
| G140946 | NA | non-coding | upstream | 9478 | 5609873 ~ 5610178 (+) |
| G140920 | NA | non-coding | upstream | 11541 | 5602529 ~ 5608115 (+) |
| G140929 | NA | non-coding | upstream | 52003 | 5566567 ~ 5567653 (+) |
| G140894 | NA | non-coding | downstream | 68772 | 5750231 ~ 5753375 (+) |
| G140950 | NA | non-coding | downstream | 140351 | 5821810 ~ 5822331 (+) |
| G140869 | NA | non-coding | downstream | 225337 | 5906796 ~ 5911149 (+) |
| G140893 | NA | non-coding | downstream | 276830 | 5958289 ~ 5959908 (+) |
| G140875 | NA | non-coding | downstream | 332230 | 6013689 ~ 6017411 (+) |
| CI01000027_05071693_05072917 | NA | other | upstream | 546520 | 5071693 ~ 5073136 (+) |
| CI01000027_05069310_05070638 | NA | other | upstream | 548788 | 5067917 ~ 5070868 (+) |
| CI01000027_05050310_05055447 | NA | other | upstream | 563717 | 5050310 ~ 5055755 (+) |
| G140440 | NA | other | upstream | 833996 | 4780417 ~ 4785660 (+) |
| G140436 | NA | other | upstream | 840318 | 4737398 ~ 4774262 (+) |
| G140862 | NA | other | downstream | 31153 | 5712612 ~ 5712702 (+) |
| CI01000027_05757143_05758496 | NA | other | downstream | 75523 | 5756982 ~ 5758881 (+) |
| G140924 | NA | other | downstream | 281747 | 5963206 ~ 5965326 (+) |
| G141052 | NA | other | downstream | 589908 | 6271367 ~ 6271600 (+) |
| CI01000027_06706050_06708485 | NA | other | downstream | 1024918 | 6705983 ~ 6708513 (+) |
