G140862


Basic Information

Item Value
gene id G140862
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5712612 ~ 5712702 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU160081
CTTGAACATTGCTGAAGTCTGCTCTCTAAAGTTTTGATTCATTCCTCTGCAATGAAGTCTATTGTGTTTGCTTTGCTGGCTGTGGCTGTGGCTTGCAGTGCAGATGATAAAATCATTGGAGGTTATGAATGTTCGCCCAACTCCCAGCCCTGGCAAGTCTACCTTACTTATGATAATGGGCAACGCTGGTGTGGAGCATCTCTGATTAATGAAAGATGGGTTGTTTCTGCTGCTCATTGCTACGTTTCAGCTTCTCGTCTTACTGTCCACTTGGGAGAGCACAATGTGTACATTGAAGAAGGCACAGAGCAGAGGATCGGGGCAGAGAAAGTGATTCCTCACCCGAAATACAGTGATTTTACATATAACAATGATTTCATGCTGATCAAGCTGAAGGAGCCTGCCATCTTTAACCAGTATGTGCAGCCAATCTCTCTGGCGACCAGTTGCTCTTCTGCAGGGGAGCAGTGCTTGGTTTCTGGATGGGGCAATCAGATCACCACTGGAGTTGACTATGCTTCAGTGCTGCAGTGTTTGAATTTGCCTGTACTGTCAAGGTCGCAGTGTGAGGGTGCATATGGTAACAGAATGACTGAAAACATGTTCTGTGCTGGATTCATGGAGGGAGGCAAAGACTCATGTCAGGGTGATTCTGGCGGTCCTGTGGTGTGCAATGGGGAACTGCGAGGAGTTGTTTCCTGGGGTTATGACTGTGCTCAGCCTGGCTATCCTGGGGTTTATGTTGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU160081 True 91 TUCP 0.47 1 5712612 5712702

Neighbor

gene id symbol gene type direction distance location
CI01000027_05701396_05711410 NA coding upstream 1152 5700876 ~ 5711460 (+)
CI01000027_05691123_05698421 NA coding upstream 13992 5691017 ~ 5698620 (+)
CI01000027_05684713_05689894 NA coding upstream 22696 5684595 ~ 5689916 (+)
CI01000027_05675953_05678901 NA coding upstream 33562 5675145 ~ 5679050 (+)
CI01000027_05668637_05672662 NA coding upstream 39548 5666375 ~ 5673064 (+)
CI01000027_05724339_05733809 NA coding downstream 2669 5723434 ~ 5733859 (+)
CI01000027_05735304_05738483 ZNF576.2 coding downstream 14362 5735127 ~ 5738924 (+)
CI01000027_05740951_05748956 NA coding downstream 20186 5740951 ~ 5748956 (+)
CI01000027_05757143_05758496 NA coding downstream 36248 5756982 ~ 5758881 (+)
CI01000027_05781043_05784234 KLHL38B coding downstream 59841 5780606 ~ 5784415 (+)
G140858 NA non-coding upstream 31153 5619656 ~ 5681459 (+)
G140946 NA non-coding upstream 102434 5609873 ~ 5610178 (+)
G140920 NA non-coding upstream 104497 5602529 ~ 5608115 (+)
G140929 NA non-coding upstream 144959 5566567 ~ 5567653 (+)
CI01000027_05563090_05579132 NA non-coding upstream 146142 5560351 ~ 5579146 (+)
G140894 NA non-coding downstream 29466 5750231 ~ 5753375 (+)
G140950 NA non-coding downstream 101045 5821810 ~ 5822331 (+)
G140869 NA non-coding downstream 186031 5906796 ~ 5911149 (+)
G140893 NA non-coding downstream 237524 5958289 ~ 5959908 (+)
G140875 NA non-coding downstream 292924 6013689 ~ 6017411 (+)
CI01000027_05071693_05072917 NA other upstream 639476 5071693 ~ 5073136 (+)
CI01000027_05069310_05070638 NA other upstream 641744 5067917 ~ 5070868 (+)
CI01000027_05050310_05055447 NA other upstream 656673 5050310 ~ 5055755 (+)
G140440 NA other upstream 926952 4780417 ~ 4785660 (+)
G140436 NA other upstream 933274 4737398 ~ 4774262 (+)
G140924 NA other downstream 242441 5963206 ~ 5965326 (+)
G141052 NA other downstream 550602 6271367 ~ 6271600 (+)
CI01000027_06706050_06708485 NA other downstream 985612 6705983 ~ 6708513 (+)
G141082 NA other downstream 1177646 6898411 ~ 6900923 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009922 zgc:92590 coding NC_007127.7 CM002900.2 25126935 ~ 25130075 (+)