G140893



Basic Information


Item Value
gene id G140893
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5958289 ~ 5959908 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU160112
ATTAAACTAATGCTTAGTAGAGTATACATTTTAAATCTGTTATTGGCCAATAAAAATTTAAAGATAAAAATGTAACCTTATCTTTATTGGTCATCTTGATATGCATCAGCACTGTTCAGAATTGTAATATTTTGCAGCCCTATTAAAAAAATAAATAAATAAAAAATAAAATGTTGTGTTAAAAGTGTTTTAAGTGACTTTCAGATATTGGCTGACAGTTTGTCCATATTCACCAAATGCACTAAATCATTTAGCCATTTTTGTGCCATTCAAACACCGACTATGTGGCTTCTTTGGAATGATTACTTCAAAAATGCACATATGAAAGTGTTAATGATCAGAGCTTTTTATAGCCACTCTTACAACTATTTGGAAATGAATCTTATATGCATACTGTATGTAAAGGTGATTTCAGAAGATGAATCCCTTTCATGTGCTGTAAATCCCTTCATATAACATGTCTATTCAAAAGATTGTTATTGGTATAAACAGTCAATCCATAAACAGAGACAACACAGAAGGCTTTCTCTGAGACATAAGTGAATTCTTTTGATTTGGCCATATCTATACAATCCAAAAGGAATAACATACTAACAACTGATTAAGAATGAGGCTACTTAAAGTTGAAATAATCAACTCGGCAGCTCAGGATAGTGCAGAACACAGAGCTGAAGAAGGCATGCAGTGAAAATTCAGTATGCAAAACAGCTCAGCTGTACAAATAAAATGTTTTCCCGGCATTTTCAAGCTTTTAAAGGCCATAAAATAGAGATAAGTAATTAGGAACAAAACATTCATCTGAAATACAAATGCAGTGAGTAGATTAGGATCTATAACCAAACGATATTGCATTTGGAGAAATATGTTAATTCCTGCTCAAATTCCATTAGTCAAAGAATATTCTTAAGTAAATATTCCAATCAATATTCCACACACATTAACAAAGAGAGAGAAAGATGTACCAGGGGAAGTTCAAGTATTATGCGGCAGCACATTTATATAAATTATCTTACTTTGGCACAAGAAAAATATTCAAAGATGTCAACAGAGATGATTAAAAATACTTCTGAGAAAGCAATTCATGCTTACAAAACTAAATGTCCAGAAGAGATGGGTGAGAAATACTGGATATAACGTGTTCAGCACTTAAAGNNNNNNNNNNNNGAGAGGCCAATAGCCTTATTTCAGTTCAGTATGTGTCACTGCAGCTGGTTTGCTCTCCTTTGTCTATGAGCTTGTTTTTGCATTACAAAGTTGGGATGATGATGACTTTAATGACAAAGTCATCTAAGCCTGTTTCTCTTGACCACAATGGTGCCAGCCACAATGTCATACACAGTCCTGTTGTGCTGAAAGAAAAGAAGTGTGATGAATGCCGGAAAAAAGAAAGCGATGGAGAAGTTCTTGTTTAA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU160112 True 1412 lncRNA 0.33 2 5958289 5959908

Neighbor


gene id symbol gene type direction distance location
CI01000027_05931114_05936800 MYLIPB coding upstream 21332 5931114 ~ 5936957 (+)
CI01000027_05882855_05906234 JARID2A coding upstream 52055 5882855 ~ 5906234 (+)
CI01000027_05836494_05847115 NA coding upstream 110688 5836494 ~ 5847601 (+)
CI01000027_05820700_05833750 DYNC1I1 coding upstream 124048 5820467 ~ 5834241 (+)
CI01000027_05807381_05817636 TBC1D31 coding upstream 140624 5807029 ~ 5817665 (+)
CI01000027_05981521_05983935 ZHX2, ZHX2A coding downstream 21448 5981356 ~ 5984703 (+)
CI01000027_05994575_05998236 NSMCE2 coding downstream 34667 5994575 ~ 5998353 (+)
CI01000027_06042239_06051165 CBLC coding downstream 81005 6040913 ~ 6051619 (+)
CI01000027_06103946_06107995 TRYPSASE, TRP-IA, PRSS59.1, PRSS59.2, TRYP, TRP-II, TRP-I coding downstream 143981 6103889 ~ 6107995 (+)
CI01000027_06108585_06112721 NA coding downstream 148677 6108585 ~ 6112755 (+)
G140869 NA non-coding upstream 47140 5906796 ~ 5911149 (+)
G140950 NA non-coding upstream 135958 5821810 ~ 5822331 (+)
G140894 NA non-coding upstream 204914 5750231 ~ 5753375 (+)
G140858 NA non-coding upstream 276830 5619656 ~ 5681459 (+)
G140946 NA non-coding upstream 348111 5609873 ~ 5610178 (+)
G140875 NA non-coding downstream 53781 6013689 ~ 6017411 (+)
G140889 NA non-coding downstream 205852 6165760 ~ 6170544 (+)
G141011 NA non-coding downstream 237255 6197163 ~ 6199521 (+)
G141023 NA non-coding downstream 261825 6221733 ~ 6223809 (+)
G141029 NA non-coding downstream 279848 6239756 ~ 6239955 (+)
CI01000027_05757143_05758496 NA other upstream 199419 5756982 ~ 5758881 (+)
G140862 NA other upstream 237524 5712612 ~ 5712702 (+)
CI01000027_05071693_05072917 NA other upstream 885153 5071693 ~ 5073136 (+)
CI01000027_05069310_05070638 NA other upstream 887421 5067917 ~ 5070868 (+)
CI01000027_05050310_05055447 NA other upstream 902350 5050310 ~ 5055755 (+)
G140924 NA other downstream 3298 5963206 ~ 5965326 (+)
G141052 NA other downstream 311459 6271367 ~ 6271600 (+)
CI01000027_06706050_06708485 NA other downstream 746469 6705983 ~ 6708513 (+)
G141082 NA other downstream 938503 6898411 ~ 6900923 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other downstream 993038 6951132 ~ 6957767 (+)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010718 fam8a1b coding NC_007127.7 CM002900.2 25593339 ~ 25597909 (-)