Gene
RNA
| Item | Value |
|---|---|
| gene id | G140875 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000027 |
| NCBI id | null |
| chromosome length | 10680226 |
| location | 6013689 ~ 6017411 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU160094 | True | 2163 | lncRNA | 0.37 | 2 | 6013689 | 6017411 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000027_05994575_05998236 | NSMCE2 | coding | upstream | 15336 | 5994575 ~ 5998353 (+) |
| CI01000027_05981521_05983935 | ZHX2, ZHX2A | coding | upstream | 28986 | 5981356 ~ 5984703 (+) |
| CI01000027_05931114_05936800 | MYLIPB | coding | upstream | 76732 | 5931114 ~ 5936957 (+) |
| CI01000027_05882855_05906234 | JARID2A | coding | upstream | 107455 | 5882855 ~ 5906234 (+) |
| CI01000027_05836494_05847115 | NA | coding | upstream | 166088 | 5836494 ~ 5847601 (+) |
| CI01000027_06042239_06051165 | CBLC | coding | downstream | 23502 | 6040913 ~ 6051619 (+) |
| CI01000027_06103946_06107995 | TRYPSASE, TRP-IA, PRSS59.1, PRSS59.2, TRYP, TRP-II, TRP-I | coding | downstream | 86478 | 6103889 ~ 6107995 (+) |
| CI01000027_06108585_06112721 | NA | coding | downstream | 91174 | 6108585 ~ 6112755 (+) |
| CI01000027_06327905_06328111 | NA | coding | downstream | 310494 | 6327905 ~ 6328220 (+) |
| CI01000027_06329025_06333271 | NA | coding | downstream | 311308 | 6328719 ~ 6333336 (+) |
| G140893 | NA | non-coding | upstream | 53781 | 5958289 ~ 5959908 (+) |
| G140869 | NA | non-coding | upstream | 102540 | 5906796 ~ 5911149 (+) |
| G140950 | NA | non-coding | upstream | 191358 | 5821810 ~ 5822331 (+) |
| G140894 | NA | non-coding | upstream | 260314 | 5750231 ~ 5753375 (+) |
| G140858 | NA | non-coding | upstream | 332230 | 5619656 ~ 5681459 (+) |
| G140889 | NA | non-coding | downstream | 148349 | 6165760 ~ 6170544 (+) |
| G141011 | NA | non-coding | downstream | 179752 | 6197163 ~ 6199521 (+) |
| G141023 | NA | non-coding | downstream | 204322 | 6221733 ~ 6223809 (+) |
| G141029 | NA | non-coding | downstream | 222345 | 6239756 ~ 6239955 (+) |
| G141048 | NA | non-coding | downstream | 232417 | 6249828 ~ 6250070 (+) |
| G140924 | NA | other | upstream | 48363 | 5963206 ~ 5965326 (+) |
| CI01000027_05757143_05758496 | NA | other | upstream | 254819 | 5756982 ~ 5758881 (+) |
| G140862 | NA | other | upstream | 292924 | 5712612 ~ 5712702 (+) |
| CI01000027_05071693_05072917 | NA | other | upstream | 940553 | 5071693 ~ 5073136 (+) |
| CI01000027_05069310_05070638 | NA | other | upstream | 942821 | 5067917 ~ 5070868 (+) |
| G141052 | NA | other | downstream | 253956 | 6271367 ~ 6271600 (+) |
| CI01000027_06706050_06708485 | NA | other | downstream | 688966 | 6705983 ~ 6708513 (+) |
| G141082 | NA | other | downstream | 881000 | 6898411 ~ 6900923 (+) |
| CI01000027_06951132_06956691 | GLIPR2, GLIPR2L | other | downstream | 935535 | 6951132 ~ 6957767 (+) |
| CI01000027_07469157_07471720 | NA | other | downstream | 1451333 | 7468964 ~ 7471999 (+) |
