G141011


Basic Information

Item Value
gene id G141011
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 6197163 ~ 6199521 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU160246
CAATGAGCAAGATGGGCAGCCTTTGTTTGCTCTGTAGTTAAGTACTTGGCATATGCAAAACATACAATATCAAAAGACATGTGAATTCAATGTGTTTGTTTGATGTACTTGTATTTTAAATCGATAAAAAATAACCGCATCGGTGCACCTGCGGATGCTGCGCGAGGGATTGCGACGTGACAGAATGCTTCATATCATCAGAGATTGTAATTACAATGCGCTCAATGTTGTTTGTAAAAAGGATTGAGTAACAGCTTAAGGTGTTTGTGGCCTATATAACATTCTGTCATTGTTTGGTGACTGTTACGATGCTGTTGAAGAGAATTTACATCCAGAGTTAAATAGTTAGGTTACTTAAAGTGCTTGTATACATCTTGTGTATGTTCATTGAGCATTATTATCTGTTTACTGTAATGCTAATGTCAGTAAGTTTTTATTTGGTGGAATACATTGTTCTAATTTTCTGTGACATACTGTATATCAGGGGATTGTGTAACGTGAGTTTATTGAACAAGAGAGTTTCACTTTGATATGAAGAAGTCACACTTCCAGCCATTTCAACGCACTGTGAAACAAAAACTAATTTCTTAGAGTATTTGTTGATTTTGCAGAGTGTGACAGAAATAAAATACTGTATGTGCCACTAGAAAACACCGCCTCGTCTGTGTGTGCAACATCTAGGTATGATAATAATATTATTTGCTAATACCACAACATTAAATGTGATTGGTTTTCATTGGTGCCGTCATATGTAAATGATATGCGGCCGTGACACTTGCACTTGGACCATAGCGCGGCCCACTGGGAAAAAAGGTTGAGAACCACTGCTGTAAACCCTAACGCTCAAAATAATTAATTGGTTTGAGTTGGGAAAACTCAAATTAAACAAATTAGTTCAATCAAATTAACTTTTATAAATACTTAGAACTTTTTCTTTTGAGTTCACGAAACTGACACATTTTGTGAAATCTGCATTGTTTAATTTTTTGAGTTGAATGAACTTGTTTTTTTTTAAATTTAGACAAACTTAAATTTACCTGAAACTGGGCTGGGATTTCTAATCCCCAGCATGCTTTGCCATTCGAAAGCGAGAATAAATGCTAAAATTACATTTTATACAATGTTTTTGTGCAAGATTAATGTTAAGAGGGGGATTTAGTAATGTTTAATGCTTTGCTATCCCAATTTAGCAGAGTTTCTGTTAAGTGGGTTTTTTCAGGGGGTTATCATCATGGTGACTAGTGGAGCATGAGCTTAGTTTGAGAACAGGTATATGATAAATGTTCTATATTGCCTTACACTTTCAGCAATTGCTACACTATGCTAATGTTATCAAAGAATTGTGTTACCAGTTAGCATTTGCTGAATTAGCTAGTTATAAATTTCCACTACTAAAAGTTGAGATTACATGATAATTTTAAGTTAAATGCATGAATTAACTTACTCAAACATTTTAAGTTAAGTGCAATTAAAATGTATGAATAAATAACTGAAATCTGCCAGTTCTGCTTACTTAAACTTTGAATTTCTTAACTTAAAAAATTATGTAACTGAGTTTTGCCGACTTATTCTGGTTTACAGTGCATCTCTGCTAGACTGCTACATTTAGGGCTTTACAGTTGTACTTCCCAGACTCTAATAAACCCCCTCAGAAAGGTCAGACCTCCTTCAGACTGGTGAGAATATGAAGAAGTGTAACTCATTGCACAAGACACTCAGAGAAGAGTCAGCTGTGCCGCCCCACCTACTACAGCACACATTCCTGATTTTATTAAGCATCCAGAAACATTTGCGTCTCGGCAGCTGTAAATGTCAGACAGTGTATGCTTTTGTGTTTTAGTGTATTCATTGTCCATAATCTGATGTGAATTTGATCTAATAACACAAATAAAACTACTACTATTACTACCCCTTCGATAATATACATTTCATGTACAAATGTATTCAATAATCTGTGTACTCAAATACAAGAGGCATAGTCCATCTACTTATTGTCATTAAGGTCAAAGAAAAAGAAAGTGTAATAGGTCAGATAAAAGTTCATTAATTTCACAATAATGCACAGTTTTGTGTTTATGGTAAACAAATGTACCTATGTAAATATTTCTGAATCTGTCCTGTCCCAGTAAGTCAGTTATGTGAACATTAAAACATAAAAAAACATTAGAACAAAAATTTACATTTATATTTATATTGTACTAAAGTCAAAAGAAATGATTAATCTTGATGTCTTGAAATGATTAGTGATAATGAAATTGCAATTATTATATTAAAAATAAATATATTAAATTAATAAATGAAAAATATATTTTTTTAATTTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU160246 True 2323 lncRNA 0.33 2 6197163 6199521

Neighbor

gene id symbol gene type direction distance location
CI01000027_06108585_06112721 NA coding upstream 84408 6108585 ~ 6112755 (+)
CI01000027_06103946_06107995 TRYPSASE, TRP-IA, PRSS59.1, PRSS59.2, TRYP, TRP-II, TRP-I coding upstream 89168 6103889 ~ 6107995 (+)
CI01000027_06042239_06051165 CBLC coding upstream 145544 6040913 ~ 6051619 (+)
CI01000027_05994575_05998236 NSMCE2 coding upstream 198810 5994575 ~ 5998353 (+)
CI01000027_05981521_05983935 ZHX2, ZHX2A coding upstream 212460 5981356 ~ 5984703 (+)
CI01000027_06327905_06328111 NA coding downstream 128384 6327905 ~ 6328220 (+)
CI01000027_06329025_06333271 NA coding downstream 129198 6328719 ~ 6333336 (+)
CI01000027_06335278_06348176 NA coding downstream 135639 6335160 ~ 6348853 (+)
CI01000027_06392269_06407773 PTPN3 coding downstream 192237 6391758 ~ 6407840 (+)
CI01000027_06410011_06426230 EPB41L4B coding downstream 210490 6410011 ~ 6426936 (+)
G140889 NA non-coding upstream 26619 6165760 ~ 6170544 (+)
G140875 NA non-coding upstream 179752 6013689 ~ 6017411 (+)
G140893 NA non-coding upstream 237255 5958289 ~ 5959908 (+)
G140869 NA non-coding upstream 286014 5906796 ~ 5911149 (+)
G140950 NA non-coding upstream 374832 5821810 ~ 5822331 (+)
G141023 NA non-coding downstream 22212 6221733 ~ 6223809 (+)
G141029 NA non-coding downstream 40235 6239756 ~ 6239955 (+)
G141048 NA non-coding downstream 50307 6249828 ~ 6250070 (+)
G141051 NA non-coding downstream 70261 6269782 ~ 6270058 (+)
G141059 NA non-coding downstream 94475 6293996 ~ 6295417 (+)
G140924 NA other upstream 231837 5963206 ~ 5965326 (+)
CI01000027_05757143_05758496 NA other upstream 438293 5756982 ~ 5758881 (+)
G140862 NA other upstream 476398 5712612 ~ 5712702 (+)
CI01000027_05071693_05072917 NA other upstream 1124027 5071693 ~ 5073136 (+)
CI01000027_05069310_05070638 NA other upstream 1126295 5067917 ~ 5070868 (+)
G141052 NA other downstream 71846 6271367 ~ 6271600 (+)
CI01000027_06706050_06708485 NA other downstream 506856 6705983 ~ 6708513 (+)
G141082 NA other downstream 698890 6898411 ~ 6900923 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other downstream 753425 6951132 ~ 6957767 (+)
CI01000027_07469157_07471720 NA other downstream 1269223 7468964 ~ 7471999 (+)

Expression


Co-expression Network