G141117


Basic Information

Item Value
gene id G141117
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 6351099 ~ 6354786 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU160361
ATTAACCCCCCGGAGCCATGTGGAATACGTTTATGATGGATGGATGCACTTTTTTTGAGCTTCAAACAGGTGGTTTCCGTGCACTGCCATTATAAAGCTTTGGAGCATCAGGGTGATTATTAATATAACTCCGATTGTATTCATCTGAAAGAAGAAAGAATATACACCTAGGATGGCTTGAGGGTGAGTAAATCATGGGGTAATTTTCATTTTAAAGTGAACTAAACCTTTAATTAGAATACAATAAAAAAATAGGAGTCGAATCGAGAACTTGTAAATTGGAATCAAATTGGGAAATCTGTATCTATTTCTCAGCCCTAATATCTTTATTATTTTGACATCAATACATATTCACATGTGGACCTTAAGTGAGGACAACAGATGTAAAAGACTACCGATCCGTTAGCTCTTCTTTGCTTAGTGTCGTAAGAGATGAATCTTGTGCTGGAGCTTGTGTTAGCTCCACATCTGTTATATATTCCACTCCCATCTTTTTCTGGTATGTCCGTTCAGGGAGAGGTGGAGGCTCTAGGTCTGAGGGGCCAATCAAGCAGTCATTGAGTTTAATGATAGGCAAGGACAATGTTTCCATGTTTCTGTGATTTTGGAAGGGTGATCCGGTCTCCAAATTCACCTGACTGGAGCTACATGAGCCAGAGGATGGGGAAGAGCACTTTAGGGTGGGAATTCCCACCCCTTCTTCTAAGCAATGAATGTTGAGTTCAGACAAGTCCAATGTATGTACGTTGGTGTTGGTTTCAATTTGTGAGAATTGTTCTGAATGATTATTCCTATGAGTTTGTACTAGTGGCAGGATCTCCTGGTTGTCTTTATCTCGGTCATGTTCATGACGTTTTTCTCTGTCACGATTTTCATAGAGAACTGTATTGGCACAAATAAATATGAAAAGCCCCACGCCCATGATGACAGGACCAATCAGCTTCAGTTTCTCTGAAGAGGTGCGTCCAGTTAAAAGATGATGTGGTGTGTGTCGACGGGATTGACTGTTCCAATACCCCACCACAGCGACGCTGATTCCTACTATCAGCAAAACGGCAGCAAACAACAAACAAGCCCCTGGTGCAGATCGCAGGCGCAGTCCGCCAATCACAGGCCCTGTATCCGTCCTTGGAGGTGGAGTCTTTGACTCTGGGACTGTTACAGCGACTTTTTCTGTGGGATTTACCTCAGACATTCTCCTGGGAAAAAAGGCAAAAATAGGCTAATGGACTCCAAATACTCAAGCAATTCTACTGCATATCGTATATTTAAAGGCCGATTCACAGTCAGATCAGTGTGTTAACCCTATCGGCATCTGTTGGCGTTGATCAGAGTTTTCACCTGACTGAACATGTTCAATCAAGTTTGCTGGTATCTGTTATGGCAGTGTGAACATGACTGTTATTTTTCATAAAATTCTAAATCCAAAGACCAATTTGTTTGTTGGTGTTTGTCTGTGCAGTGTGAATTCATTTGTCTTTTTGTCTTTTTAAATGAGAATACTGCATGCATTATTACAGTAATCCTAGCAGTTTCTCAGAAGCATTTATTTGTGGTAAAGACAACTAATCCTTGAAAATCCTTGTATAATCCTTTTTTTTTTTTTTTAAGTTCTTTGTACTTCCAGTTCCTCACAGGTTTACTGTAAATGCTATCTGACATTTCATCTCTGCTCAGAAAGGCATGCTGTCTACTTTCGCCTTTACTTTTTTTAGCTGTTTTCTTTTTATAGATTTTAACTGTTCTATATATTTAAAATACAATAACTGAAATAACAAGTAATACAAAATCATGTTTCTTCAACCAACAATAACATTTTTCCACCTTAAAAGCTGCTGTTCTGAAAACCAGACCTGTCCGCTCAGGAACTACTAATAATCTAGTTTAAGCCTTTTCTATGCTGCTCTATTCTGTGTATATAAATACACACATGGGTAACACATCTTGCCAACAGGAAAACATGATCATGTACTACTACTGAAATATAGGTGTTAAAATCATGGTTAGCACATTTTAGGTAGAAAATAGCTATCAGGATGTGGAATCGCTGTAAACTATTTCTTAAGAAGATAGATACAAGGTATTTTTTACTACCAACTTTTTAATACCATCGAATCTAGTCATTCAGGATATACAAACAAATCCAACTTAAACTAGAAGTCACATGGCATTGCAAAAAATTTTACAATAGCATTTATAAACATATTTTAATCTAACAACATTATTTTATGTAACAATAACCATGCTATACTATTTTACATTTTTCTTTTCCACTAAGCTGTTCATTCAAATAAGGTTAACTTCAGGTCAACCAAGGAAGTATTCCAGAAATCAGGTTATGTGACATACCCGGGGTATGTTTAAAGGTAAGTAAGCGGATAACCTCAACTTTCCGTAAAAACTGAGGTAACTTTCAGGATATGTAGCCATAGCTACTTACTCTCTGAATATAACCTGCTCCGGAGCATGTTCTGTTCAGCGCATGCGTGCCCTATTGATGAGGCTCCATTGGACGTGACAGATTACTATATGATATATAGTTATATATATCGATATATAAAGCACTACTAAAACAAGATAATGTTTATTTTATATATATAGTTCTCATCTCACACATTGTTGATCTGCATTCAGACGTTTTTAGGTTTTTTTTGTTTGTTTTTTTTTTCTATGCTATAATATACTTCTATAATAAAAAAGATAGACCTATATGATATATCTTACCTTTCAAGCAATGTGGAAGCAAAATGTCTAAACATAAAAAATAAACTTTTACAGCCATGTTATCTTTGCAAGCACAGACTGTTATTCAGTTTAATCAGTCTTTCTTTTAATAATATAATTAGCATCAAACAAACAATATAGTTCTTATTCGCAGTGATTACAGATTATTAAACGAAAAGATTGAAAAATTATTGCACAACCACCAAATAGGTGGTGATACGATATGCACTATGTAAATAGTACGAAAAAAAGGAGAAATAAGTAGTATGGCGCGCTTTTTCTTAGCGTCCGTTTCCATGGTGATTCGTTGCGCTGTTGAGAATGTCCGTGAACATAAATTATAACATAACATAACTCTGAATTACTCCCGGACGCGTTTTTTGAAACCAGCATAAGCAAGGTTTGGATTAATCAACCTAGAGTTTAGGGTATGTTTGACGGTAAGATAACCTTGCATTCTGGAATACACCCCAGATGGCTAATTCACCATATAGGTTCCCTCAGGAATTTCCTATGGGTTATTAAAATAGCATGTTTCGATTTATGAGTAAAAAAAGGTCAGTGGTTAACATTACTTTCAGAGACTTTTATATTACATCATTACAAATGATAAACATACCGCAAATGTTTTTTTTTTGTTTTTGTTTGTTTGTTTGTTTGTTTTTGGGGTTTTTTGACAATTCTGTTACCTTGGCAGGTCTTATTATTGGGAGAAGCCAGCTTCCACCGCGACTCTACCATTGAAGCGTAACGGTCAACTTGGTCACGTGTGCCTTTACTTTAGCGAATTTCGAATATCTACAGTCATTAATGTGTTCGACTTGAAGCGGCGCTGCGCAGACCGATCGGTGTATGACATGTACGAACAGCATAATCAAATTAAAAACGAGAGAAATATACAACTACTCATTTACAAACACTGATTATATGTATAAAATATATGTACAATATATTTTACGTTTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU160361 True 3688 lncRNA 0.36 1 6351099 6354786

Neighbor

gene id symbol gene type direction distance location
CI01000027_06335278_06348176 NA coding upstream 2246 6335160 ~ 6348853 (+)
CI01000027_06329025_06333271 NA coding upstream 17763 6328719 ~ 6333336 (+)
CI01000027_06327905_06328111 NA coding upstream 22879 6327905 ~ 6328220 (+)
CI01000027_06108585_06112721 NA coding upstream 238344 6108585 ~ 6112755 (+)
CI01000027_06103946_06107995 TRYPSASE, TRP-IA, PRSS59.1, PRSS59.2, TRYP, TRP-II, TRP-I coding upstream 243104 6103889 ~ 6107995 (+)
CI01000027_06392269_06407773 PTPN3 coding downstream 36972 6391758 ~ 6407840 (+)
CI01000027_06410011_06426230 EPB41L4B coding downstream 55225 6410011 ~ 6426936 (+)
CI01000027_06458587_06470747 KIAA1429 coding downstream 103801 6458587 ~ 6470747 (+)
CI01000027_06470650_06470837 NA coding downstream 115864 6470650 ~ 6470988 (+)
CI01000027_06477695_06489968 RAD54B coding downstream 122909 6477695 ~ 6490033 (+)
G141038 NA non-coding upstream 25755 6322828 ~ 6325344 (+)
G141032 NA non-coding upstream 48315 6301000 ~ 6302784 (+)
G141044 NA non-coding upstream 50516 6300314 ~ 6300583 (+)
G141037 NA non-coding upstream 51341 6299330 ~ 6299758 (+)
G141060 NA non-coding upstream 52521 6298353 ~ 6298578 (+)
G141093 NA non-coding downstream 53763 6408549 ~ 6408804 (+)
G141080 NA non-coding downstream 54152 6408938 ~ 6409292 (+)
G141114 NA non-coding downstream 83139 6437925 ~ 6440544 (+)
G141113 NA non-coding downstream 89508 6444294 ~ 6445548 (+)
G141108 NA non-coding downstream 91796 6446582 ~ 6446858 (+)
G141052 NA other upstream 79499 6271367 ~ 6271600 (+)
G140924 NA other upstream 385773 5963206 ~ 5965326 (+)
CI01000027_05757143_05758496 NA other upstream 592229 5756982 ~ 5758881 (+)
G140862 NA other upstream 630334 5712612 ~ 5712702 (+)
CI01000027_05071693_05072917 NA other upstream 1277963 5071693 ~ 5073136 (+)
CI01000027_06706050_06708485 NA other downstream 351591 6705983 ~ 6708513 (+)
G141082 NA other downstream 543625 6898411 ~ 6900923 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other downstream 598160 6951132 ~ 6957767 (+)
CI01000027_07469157_07471720 NA other downstream 1113958 7468964 ~ 7471999 (+)
CI01000027_07947743_07951397 NA other downstream 1595917 7947657 ~ 7951942 (+)

Expression


Co-expression Network