G141114


Basic Information

Item Value
gene id G141114
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 6437925 ~ 6440544 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU160358
TAGATAATCATATTTCTCTCCTTAAATCTCACATACACAATCAGTTCCTGAACCAGTTCTTCCACTATGGAGTGAACTTAAATCCACATTATAGCTATGTTAATGGACCTGGGTGTGACAAATTCACTTTGTTGCGTGTTAGCCTTGTAAACACACCCAGTTGTGCACTTGTTAAAGACAAAGTTAAAGCTTAATTTGAGCAGCTCATCGAGGTACAAGACCACAAAACACATTACATTACCCTCAAACACAAACATGCACACTTACACAGTGGTTGTAAGTAAATATTCACACTTTGTGAAACCTCTCAGTAAACTTAAGACAGCTACTGGTGAGTATTCGACATATGGTGGCTGTGTCTAAAAGGTAAGGAAGTCATGTTTATGCAAGAAGATTCCTCCTAAAAAACTGGTTCAGACAGGTTTCCAAGGCAATTCAAGTGTATTCTAGATATAACTAAGTAAATATTTAAACCTTGGATACAGCTATGCATCTATGATGCCTTTATTCCTCAGTAAACTACCTAAGTTTTGGACACAGCCACTGGCTTGGATTAATACATACACTCTGAGTATTAGACACATCATTAACTTAAAGCTGCAGTCCATAACTTTTTTTTGGTTAAAAATTATCCAAAATCAATTTTTGAGCAAGTACATAACCAGTCAGTGTTCAAAAATATCTCCTTACCTTAGCCCGATTCACAACGGTAAGCTTGTAATAATGTTTTATAATAAATCGATACCGGTGGATTTCCGCGGGAAATTCGAGCATGCAGCAGTTCGTCTTTGCGTCATTACGTCACGTCAGTAAACAGAAAGAAAGGAGTCCCTGCATATAGGATGCTGCTGGTAGCGGATCATTTATAGCCTTTTCTCACAGCAGCTGAAATAATTAAACTTATCATTTTGATGGCGGATTGTAATCCAGAAAGGTCCACATGTCAATCATCAGTGACAACTGGAGATTCACCCGTAGTCAAAAGCAAAAGACTTCGGACTGTGGAGTGGCTACAGAAATTGAAATCTACAGGTAACGCTAATACACTCTAAATACACAGTCACGCAATGCTTATGTTGTTAACATGAACAATTTGAGAATAAAGTATAACAATAATAATAATTTGCACGGTTTGATGCGATATGAGCCAAGCGATCGTTAGATTTAATCACCATTGGCAGCGCGATTTATTGTAGGCCTAATGCTTTTTCCCTCAGTTGGTCAGAACAAAAGTGGCAGACATGTTACTTACTTGTTCAGATGACATATTCCGGTGAAAATTCCTACTTTGGTCATATTTCAAGACTACAATCTGTGATTCCGAAGTACAGTATCCACACCGGTGTGGTGACTGACAGCAAACAATAGATTCGTCTGCGCTGAGGAGCTGTGCCGATGCACAACGCACGTAAAGATAATAATTCCGCATATAACTGCAATTGCAGGTTTCAAACAGAGATGGCGACTAAGAGGCAAATCTTACGGACAGCAGCTTTAAAAATAAGTGGTATTCAATCATCCATTAATCATCTTCTGTGAATGAAACTGCAGTGAACTATTGCTCATACACTGCATATGTATTGTATATGTGCATGGCTTATCTTATAATGAAAAACAACATTAACAGATATAACTCTTACCTGGGATAATAGGTGGTGTAGTTCATGTACAGCTGGTTACTGGCAGGGTAGAAGGCCGTTGTTGGTGGCAGGGGCCGGGGACTCAGCAGGAACTGGGAGGGGTAGATAGCTGCTGGCTCCACAGGTAGCACTGCTCCTGCAGGAAGGACAGCTCCGGCAGGAAGAACAGCCGTCCCGTGAGGAAACGTGTACGATGGAGGAGACAAACCTGAAATGGGGGAGGTGGGATATTGAGGAATTATTGAGAGAAAAAACAGCCTTGAAGCTTCCAGTTATAGCCATCAGACAGGATTGTAGAGTTAATCAATAAAAATTGATGACAAAAAAGTTTTTTTGATTGCACCACGGTGATAATTAAATGGTTTATGGTTGATGAAAATATGACTAGAAAAGGTAACAGTGCATCTGTTAGAGTGGTGCAGGGATGACGTCAAACCCCGCAAGTCACCCTTGAGATTTTCCTATGGGGTTTTATAATAGGGTGTTTTGTTCTACAACGTAAATTACACACAACCATAAATCAAAAACAAATTTTGAAGCTATTATTTAAAAAAAAAAAAAGTATGTTTCTAATAAGTAATTAGATAAGATTGTTTGGGGTGTAAGTGTGTGCAGTTTAGGTTGTAGAACAAAACGTTCAAGTATTGTCAAGTTATGTTTACCACAGACCTTATTTTACTCATAAATTTAAAAATATCCCATTATAAAAACCCATAGGAAAATCTTGAGGAAACCAGTGGCAAATTAGTCTTGTGGGTTTTGACGTCATCCCTGTACCACTCTGTTAACAATGCGCTACCAATGATTTTAGAAAAAAAAAGTTGAAATAATCCAGCAAGAATTGACCTGTTGGAAATGAATGGTTCTGAACCAAGGGGCCTCAGCAAACTTCCAAGGGGCCCACAGGATGACTTAAAAGTATGTTAATTAATAAATTATTTTTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGTCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU160358 True 2620 lncRNA 0.38 1 6437925 6440544

Neighbor

gene id symbol gene type direction distance location
CI01000027_06410011_06426230 EPB41L4B coding upstream 10989 6410011 ~ 6426936 (+)
CI01000027_06392269_06407773 PTPN3 coding upstream 30085 6391758 ~ 6407840 (+)
CI01000027_06335278_06348176 NA coding upstream 89072 6335160 ~ 6348853 (+)
CI01000027_06329025_06333271 NA coding upstream 104589 6328719 ~ 6333336 (+)
CI01000027_06327905_06328111 NA coding upstream 109705 6327905 ~ 6328220 (+)
CI01000027_06458587_06470747 KIAA1429 coding downstream 18043 6458587 ~ 6470747 (+)
CI01000027_06470650_06470837 NA coding downstream 30106 6470650 ~ 6470988 (+)
CI01000027_06477695_06489968 RAD54B coding downstream 37151 6477695 ~ 6490033 (+)
CI01000027_06495825_06497691 GEM coding downstream 54807 6495351 ~ 6498078 (+)
CI01000027_06504915_06514535 NA coding downstream 63767 6504311 ~ 6515150 (+)
G141080 NA non-coding upstream 28633 6408938 ~ 6409292 (+)
G141093 NA non-coding upstream 29121 6408549 ~ 6408804 (+)
G141117 NA non-coding upstream 83139 6351099 ~ 6354786 (+)
G141038 NA non-coding upstream 112581 6322828 ~ 6325344 (+)
G141032 NA non-coding upstream 135141 6301000 ~ 6302784 (+)
G141113 NA non-coding downstream 3750 6444294 ~ 6445548 (+)
G141108 NA non-coding downstream 6038 6446582 ~ 6446858 (+)
G141112 NA non-coding downstream 10593 6451137 ~ 6451529 (+)
G141097 NA non-coding downstream 12575 6453119 ~ 6456366 (+)
G141138 NA non-coding downstream 52610 6493154 ~ 6493400 (+)
G141052 NA other upstream 166325 6271367 ~ 6271600 (+)
G140924 NA other upstream 472599 5963206 ~ 5965326 (+)
CI01000027_05757143_05758496 NA other upstream 679055 5756982 ~ 5758881 (+)
G140862 NA other upstream 717160 5712612 ~ 5712702 (+)
CI01000027_05071693_05072917 NA other upstream 1364789 5071693 ~ 5073136 (+)
CI01000027_06706050_06708485 NA other downstream 265833 6705983 ~ 6708513 (+)
G141082 NA other downstream 457867 6898411 ~ 6900923 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other downstream 512402 6951132 ~ 6957767 (+)
CI01000027_07469157_07471720 NA other downstream 1028200 7468964 ~ 7471999 (+)
CI01000027_07947743_07951397 NA other downstream 1510159 7947657 ~ 7951942 (+)

Expression


Co-expression Network