Gene
RNA
| Item | Value |
|---|---|
| gene id | G141146 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000027 |
| NCBI id | null |
| chromosome length | 10680226 |
| location | 6534084 ~ 6534323 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| unnamed protein product |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU160396 | True | 240 | lncRNA | 0.48 | 1 | 6534084 | 6534323 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000027_06504915_06514535 | NA | coding | upstream | 18934 | 6504311 ~ 6515150 (+) |
| CI01000027_06495825_06497691 | GEM | coding | upstream | 36006 | 6495351 ~ 6498078 (+) |
| CI01000027_06477695_06489968 | RAD54B | coding | upstream | 44051 | 6477695 ~ 6490033 (+) |
| CI01000027_06470650_06470837 | NA | coding | upstream | 63096 | 6470650 ~ 6470988 (+) |
| CI01000027_06458587_06470747 | KIAA1429 | coding | upstream | 63337 | 6458587 ~ 6470747 (+) |
| CI01000027_06604099_06652019 | GALNT1 | coding | downstream | 69776 | 6604099 ~ 6652188 (+) |
| CI01000027_06706050_06708485 | NA | coding | downstream | 171660 | 6705983 ~ 6708513 (+) |
| CI01000027_06785671_06803146 | NR4A3 | coding | downstream | 251348 | 6785671 ~ 6803213 (+) |
| CI01000027_06811768_06817052 | NA | coding | downstream | 276771 | 6811094 ~ 6817163 (+) |
| CI01000027_06859191_06877582 | NA | coding | downstream | 324868 | 6859191 ~ 6877625 (+) |
| G141145 | NA | non-coding | upstream | 3266 | 6530592 ~ 6530818 (+) |
| G141138 | NA | non-coding | upstream | 40684 | 6493154 ~ 6493400 (+) |
| G141097 | NA | non-coding | upstream | 77718 | 6453119 ~ 6456366 (+) |
| G141112 | NA | non-coding | upstream | 82555 | 6451137 ~ 6451529 (+) |
| G141108 | NA | non-coding | upstream | 87226 | 6446582 ~ 6446858 (+) |
| G141147 | NA | non-coding | downstream | 2054 | 6536377 ~ 6536592 (+) |
| G141106 | NA | non-coding | downstream | 129692 | 6664015 ~ 6666990 (+) |
| G141111 | NA | non-coding | downstream | 145509 | 6679832 ~ 6680388 (+) |
| G141160 | NA | non-coding | downstream | 159955 | 6694278 ~ 6694549 (+) |
| G141052 | NA | other | upstream | 262484 | 6271367 ~ 6271600 (+) |
| G140924 | NA | other | upstream | 568758 | 5963206 ~ 5965326 (+) |
| CI01000027_05757143_05758496 | NA | other | upstream | 775214 | 5756982 ~ 5758881 (+) |
| G140862 | NA | other | upstream | 813319 | 5712612 ~ 5712702 (+) |
| CI01000027_05071693_05072917 | NA | other | upstream | 1460948 | 5071693 ~ 5073136 (+) |
| G141082 | NA | other | downstream | 364088 | 6898411 ~ 6900923 (+) |
| CI01000027_06951132_06956691 | GLIPR2, GLIPR2L | other | downstream | 418623 | 6951132 ~ 6957767 (+) |
| CI01000027_07469157_07471720 | NA | other | downstream | 934421 | 7468964 ~ 7471999 (+) |
| CI01000027_07947743_07951397 | NA | other | downstream | 1416380 | 7947657 ~ 7951942 (+) |
