Gene
RNA
| Item | Value |
|---|---|
| gene id | G141147 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000027 |
| NCBI id | null |
| chromosome length | 10680226 |
| location | 6536377 ~ 6536592 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| unnamed protein product |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU160397 | True | 216 | lncRNA | 0.48 | 1 | 6536377 | 6536592 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000027_06504915_06514535 | NA | coding | upstream | 21227 | 6504311 ~ 6515150 (+) |
| CI01000027_06495825_06497691 | GEM | coding | upstream | 38299 | 6495351 ~ 6498078 (+) |
| CI01000027_06477695_06489968 | RAD54B | coding | upstream | 46344 | 6477695 ~ 6490033 (+) |
| CI01000027_06470650_06470837 | NA | coding | upstream | 65389 | 6470650 ~ 6470988 (+) |
| CI01000027_06458587_06470747 | KIAA1429 | coding | upstream | 65630 | 6458587 ~ 6470747 (+) |
| CI01000027_06604099_06652019 | GALNT1 | coding | downstream | 67507 | 6604099 ~ 6652188 (+) |
| CI01000027_06706050_06708485 | NA | coding | downstream | 169391 | 6705983 ~ 6708513 (+) |
| CI01000027_06785671_06803146 | NR4A3 | coding | downstream | 249079 | 6785671 ~ 6803213 (+) |
| CI01000027_06811768_06817052 | NA | coding | downstream | 274502 | 6811094 ~ 6817163 (+) |
| CI01000027_06859191_06877582 | NA | coding | downstream | 322599 | 6859191 ~ 6877625 (+) |
| G141146 | NA | non-coding | upstream | 2054 | 6534084 ~ 6534323 (+) |
| G141145 | NA | non-coding | upstream | 5559 | 6530592 ~ 6530818 (+) |
| G141138 | NA | non-coding | upstream | 42977 | 6493154 ~ 6493400 (+) |
| G141097 | NA | non-coding | upstream | 80011 | 6453119 ~ 6456366 (+) |
| G141112 | NA | non-coding | upstream | 84848 | 6451137 ~ 6451529 (+) |
| G141106 | NA | non-coding | downstream | 127423 | 6664015 ~ 6666990 (+) |
| G141111 | NA | non-coding | downstream | 143240 | 6679832 ~ 6680388 (+) |
| G141160 | NA | non-coding | downstream | 157686 | 6694278 ~ 6694549 (+) |
| G141166 | NA | non-coding | downstream | 184912 | 6721504 ~ 6721759 (+) |
| G141052 | NA | other | upstream | 264777 | 6271367 ~ 6271600 (+) |
| G140924 | NA | other | upstream | 571051 | 5963206 ~ 5965326 (+) |
| CI01000027_05757143_05758496 | NA | other | upstream | 777507 | 5756982 ~ 5758881 (+) |
| G140862 | NA | other | upstream | 815612 | 5712612 ~ 5712702 (+) |
| CI01000027_05071693_05072917 | NA | other | upstream | 1463241 | 5071693 ~ 5073136 (+) |
| G141082 | NA | other | downstream | 361819 | 6898411 ~ 6900923 (+) |
| CI01000027_06951132_06956691 | GLIPR2, GLIPR2L | other | downstream | 416354 | 6951132 ~ 6957767 (+) |
| CI01000027_07469157_07471720 | NA | other | downstream | 932152 | 7468964 ~ 7471999 (+) |
| CI01000027_07947743_07951397 | NA | other | downstream | 1414111 | 7947657 ~ 7951942 (+) |
