G141106


Basic Information

Item Value
gene id G141106
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 6664015 ~ 6666990 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU160350
TGGCATATTTGGTTACACTTTATTTTAAGTGAGTAACTGCATTGTGTTATTCCATAATTGCATTTAAGTGGGTCAAAAAAAAAAGCACTCTAAAGTCCAGTTAACTGCATTTAATTTAACTTTAATCTATAATACATTTTCATTAAATTGCAATAAACATGCAATTAAGTGTCTGAAAACAATACATTCAGTACACACTAATGTATATTCTTTTAAAGTATGGTATTTCCATAATTGGTACTCTTTTTAAAAGTATACTTTTTAAAGAGGGCATATTCAAATGACACAAATGACATTTGAGAGCAGGCGCAAAAGGAAAGATTTTCAGAGAATAACTTGAGTTTTGAGTTTCTCACACAAAGCTATCATACTTCAGAAGACTTGGAATATAGCTCAAGATTTGTATGGATTACTGTACTTGTAGTGGTGCTAGTCACCTTTCACTTTCATTTTATCTGTCTCTTAAAATTCACTATGTCTTTTCATGTAGTCTTCAACAGCATTGTAAGCTCTTAACTCTGACCTTATGTGTGATCCATTCTCTCCCGTGTTGATAAACATTTGTGGCAGCAGAGTTTAGAGCTTTCTGAACAACCTGGGCCTCTGGGAGCCAACTACAACACACACACACAGTCTGTTACGCAACATTTCGAGAAGATTCCCGACTTCCAGTGAATGTTAAGTGTGTGTTTCCACTTACTTGGCCCACTCTGGGTGGTTGGACACAGTCTCGTTGATCAGGTTACTGGTGACCTCTATGATATGAACACTCTCTTGGTGCACCTGTGAACAAAAATACAATTGGTGAGAGATGATGTGTGCGGAGGCTGGGATCAGTCACGGATCACGTGTTTCACGCAGTGGAATAATCAGCCCAAGGACAGTGGTTTGAAAACACGGTACCATAGCTGTGAGCAGCAAGGCCATGAGCAGTGTGCCGGTTACCAGCAGGAAGATAATGAAAATACTAATCAGCTTATCCAAGGAGCGCTCCAGCCACACGATCATCTGCAAAGAGATCAAAGAGAGAGAGAGAAAGAGAGATCAGTTTCAACAAAACAATTCTGATCTATCATGCAACTGTGTGAGAACACAGAAACCTGCTTCCCCTCTGCCAAACCTGAGGAACAATCGTGTTCCTTTGGTTCTGAAAACCTAAAAGTAAAATGCTAACCTCTTTCAGTAAAATAAAACAATTAAAGGAACAGTTCACCCAACAATCAAAAATATTATTCTTGTTTACTTTTTCTTCCATGGTAAAACAGAAGGAGAAATGATAATGCAATAAAACCAAAGCGGAAAGTTATTTATTCTGTTAAAGGCACAATATGTAATTTTTTGCCACTAGAGGTCGTTTATTCAAAACAAAGGCGTAGCTTGATGGCGCCTTTGATTTTGTGGAATCGTGGGAGGTGTTGTCTTCATGTCTAAAGCCGGTGGAAAAGAATCCAGGGCTCGGGCAGAAATCATATTCATGGATGAGCTATTGTATTAAAGATTTATTAACATTACTGTAGTATGAAAGCAGGGTGTGGCTGAAAGCCGTTGGAGCGGAACGAGGCCGCTGAAGCGATTGCTATTAAGAGACAAGCGTGACACATGGCTCGAAAGCAGTGGAGCTTGTATTATGCTGCAGACGAGCGCTTCCGTTTAAATAACAACAAAAATATTCCTTTATTTCAAGTTTTCTAAAGCCCTGCAACAGTTTTTTGAGAGGAACAGATTGTTGTTATTAACTAAAAACAACATTTTGGGTAAACTATTCCTTTAAAAACTTTAGGATTCATGGATGAGTTCTGAGCTTCATAACCCTGCGAAAATATTAATAGTAAACACTCTGTTGAAAATTCACATGCTCTGACACCCTGCTAACCTGTTGGATGACTAAGCAAGACTAACTGCTGAGTGAATGAGCTAACAGCACAACTGATGATCATCATGTCAGGAAACAGGAGGTGGTGGGCATATTTTTGTTTTTGGCAGGTGGACTTGGTTTCTCTGCTCACCCAGATTCTGTCAGCCCTGTGGGCGGTACTTGCATGTCTAATCCTGTTCCCTGGTCCTGTTAGCGCTAAGTGTTAACATCACACACAAAACTAGTAATGTTGATGATGGATTAGTACAGAGTACATCATTAAGGAAACTAAAAGAAAGACTAAAGACTAAAAAAGAACCGCATCACTCCTCCTCCAAAACGTTAAGAGCCTGATACGCAGTTTCAAAGTAATGCTGGCAAATGCCAAAAGATTCCTGAGGGGAGGGACATACTTTCAGACCTGAAAATAACTTCATCACCATCTGCTCCTGTTGAGCCACAGTCAGATTCATCTTAATCTGACTCAACACAGGAGTTGATGCATGGAACATTAACAATGACATAAAACAGAAAACAAACAAACTAACAACAGCAAAAATATTCTTTGACAGAATATTCTGAAGAATTCTGAAGTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU160350 True 2452 lncRNA 0.39 2 6664015 6666990

Neighbor

gene id symbol gene type direction distance location
CI01000027_06604099_06652019 GALNT1 coding upstream 11827 6604099 ~ 6652188 (+)
CI01000027_06504915_06514535 NA coding upstream 148865 6504311 ~ 6515150 (+)
CI01000027_06495825_06497691 GEM coding upstream 165937 6495351 ~ 6498078 (+)
CI01000027_06477695_06489968 RAD54B coding upstream 173982 6477695 ~ 6490033 (+)
CI01000027_06470650_06470837 NA coding upstream 193027 6470650 ~ 6470988 (+)
CI01000027_06706050_06708485 NA coding downstream 38993 6705983 ~ 6708513 (+)
CI01000027_06785671_06803146 NR4A3 coding downstream 118681 6785671 ~ 6803213 (+)
CI01000027_06811768_06817052 NA coding downstream 144104 6811094 ~ 6817163 (+)
CI01000027_06859191_06877582 NA coding downstream 192201 6859191 ~ 6877625 (+)
CI01000027_06906104_06909909 NA coding downstream 239114 6906104 ~ 6910164 (+)
G141147 NA non-coding upstream 127423 6536377 ~ 6536592 (+)
G141146 NA non-coding upstream 129692 6534084 ~ 6534323 (+)
G141145 NA non-coding upstream 133197 6530592 ~ 6530818 (+)
G141138 NA non-coding upstream 170615 6493154 ~ 6493400 (+)
G141111 NA non-coding downstream 12842 6679832 ~ 6680388 (+)
G141160 NA non-coding downstream 27288 6694278 ~ 6694549 (+)
G141166 NA non-coding downstream 54514 6721504 ~ 6721759 (+)
G141170 NA non-coding downstream 63484 6730474 ~ 6730733 (+)
G141177 NA non-coding downstream 74980 6741970 ~ 6742199 (+)
G141052 NA other upstream 392415 6271367 ~ 6271600 (+)
G140924 NA other upstream 698689 5963206 ~ 5965326 (+)
CI01000027_05757143_05758496 NA other upstream 905145 5756982 ~ 5758881 (+)
G140862 NA other upstream 943250 5712612 ~ 5712702 (+)
CI01000027_05071693_05072917 NA other upstream 1590879 5071693 ~ 5073136 (+)
G141082 NA other downstream 231421 6898411 ~ 6900923 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other downstream 285956 6951132 ~ 6957767 (+)
CI01000027_07469157_07471720 NA other downstream 801754 7468964 ~ 7471999 (+)
CI01000027_07947743_07951397 NA other downstream 1283713 7947657 ~ 7951942 (+)

Expression


Co-expression Network