G141198


Basic Information

Item Value
gene id G141198
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 6779685 ~ 6780482 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU160448
GTCTCTAAGCTGAACCGGTCTTGTCACAAACGAGGCTAATATCACTTGACCCGGTTTACCCTCTCCCTCTTTAAGCATCTAAAGAGGCGGGGGAAGGTCACGGAGAGGGGATTCCCCGTGACGGCAAAGCAAGGAGCGAGTTTCCCTCCGCGCGCGCACCCTTTCCATACCTAGCCCCAGGTCTCGCGACGCGAACATGTTCCCCTCAACTACAGACCACCACCTGATGTACTGCTGGACTTCTTGAAGTTGGGAAATGGTCAAAATATAAACGACAGTTAAATAATAAAAAATATATAACAAGCAAACACAAGCCAATTGCTCGCTACAATATATATATATATGTATCTTTATCCAGGCATTTATATGGTTTATTTTCAGATATGGACCTGATGCCTGTAGCAAGAATAGCCTTATTTACAACTTCTTTGCAACAGCTTTTCGTGAGCTGTGGAAGAAAAATTACCTGTAGTCTTTTACCGACTAGACAATGCACTTGTTCTATCGATTAGCGATAAAAAAAAAACATTACTGGCGATATTTTGTCGCGAGACTTAGCTTAGTACGAACTGTCCCTTTTTAAACGGTTGCCTTTAAACCACATTCTATCTACAAAAACATTTAGCACAACAACCGAAACCTGTTTAGTGTCCTCGGGACGTCCGAACTTATACTGTCCAGCTTTTCCGAAGAGCCAAGCGAGTTAAACAACATGGTTAGAATGGAGAGACCTGAGAAAAAAGCTTCATTTTGAGCCAACGGGCAGCGAAATTACCCGAGGCTATCGGTTCTCTACTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU160448 True 798 lncRNA 0.43 1 6779685 6780482

Neighbor

gene id symbol gene type direction distance location
CI01000027_06706050_06708485 NA coding upstream 71172 6705983 ~ 6708513 (+)
CI01000027_06604099_06652019 GALNT1 coding upstream 127497 6604099 ~ 6652188 (+)
CI01000027_06504915_06514535 NA coding upstream 264535 6504311 ~ 6515150 (+)
CI01000027_06495825_06497691 GEM coding upstream 281607 6495351 ~ 6498078 (+)
CI01000027_06477695_06489968 RAD54B coding upstream 289652 6477695 ~ 6490033 (+)
CI01000027_06785671_06803146 NR4A3 coding downstream 5189 6785671 ~ 6803213 (+)
CI01000027_06811768_06817052 NA coding downstream 30612 6811094 ~ 6817163 (+)
CI01000027_06859191_06877582 NA coding downstream 78709 6859191 ~ 6877625 (+)
CI01000027_06906104_06909909 NA coding downstream 125622 6906104 ~ 6910164 (+)
CI01000027_06915303_06927001 TMEM67 coding downstream 134821 6915303 ~ 6927308 (+)
G141197 NA non-coding upstream 1189 6778215 ~ 6778496 (+)
G141187 NA non-coding upstream 15129 6764348 ~ 6764556 (+)
G141183 NA non-coding upstream 23822 6755577 ~ 6755863 (+)
G141182 NA non-coding upstream 25577 6753896 ~ 6754108 (+)
G141177 NA non-coding upstream 37486 6741970 ~ 6742199 (+)
G141209 NA non-coding downstream 90499 6870981 ~ 6871218 (+)
G141211 NA non-coding downstream 98523 6879005 ~ 6879349 (+)
G141089 NA non-coding downstream 132014 6912496 ~ 6915184 (+)
G141220 NA non-coding downstream 191634 6972116 ~ 6972331 (+)
G141221 NA non-coding downstream 192778 6973260 ~ 6973484 (+)
G141052 NA other upstream 508085 6271367 ~ 6271600 (+)
G140924 NA other upstream 814359 5963206 ~ 5965326 (+)
CI01000027_05757143_05758496 NA other upstream 1020815 5756982 ~ 5758881 (+)
G140862 NA other upstream 1058920 5712612 ~ 5712702 (+)
G141082 NA other downstream 117929 6898411 ~ 6900923 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other downstream 172464 6951132 ~ 6957767 (+)
CI01000027_07469157_07471720 NA other downstream 688262 7468964 ~ 7471999 (+)
CI01000027_07947743_07951397 NA other downstream 1170221 7947657 ~ 7951942 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other downstream 1245915 8025788 ~ 8032041 (+)

Expression


Co-expression Network