G141638


Basic Information

Item Value
gene id G141638
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 6788627 ~ 6796707 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU160955
ATGGATGTTATGTTGAAGATTGTGTACTTTTGAAGTCAGAGCCATATACTGGAAGTCTCCATTAGAAGTATGTGTGATGTGAGATGATGTGAGATCTGTGTGTGTCTGCATGTACCTGTTGGCGAGGCGAAGCACAAAAAGCTCAAGGAAGGCAGAGTCAATGAGCAGATTCTGGTCATCGTGGTGAAGCTCAGAGAATCCAGGCAGCCGTTCGGCCCAACAGCGCGTCACCTCCATGGAGCCAGTTAGCACTCTGTAGAACATCTGGATCTGCTGAGACTCAGATAAACCCACTGGCTCCACTGCACTGAACTACAGGAAGAGAGAGAGAGATGAAAACGCCACATAAATCACAATCACTCATTTTAATATGACACCAATGTATGGTGAACCCTCTGATTCATAACAACCACTATATAATGAACTAATTTTTGCATTTTTTAACCATTCAGGGGAAAATGCTAGGTCTTATCCATCACGAGTCTTTGACCCTTTCTCATAGTTTTAAATGACTGTCCTCTTAAATGTGATTTTGTTTTTTGTACATTTTTATAAATTCAAAATGGCTGACAAAAGTTTGTCTGGAATTTACCATTGTTTATTGCAGTAGACAAAAGTGTAAATCTTTTTAAATGATTTTTGGGAAAATAATAATTGATTGTGAATATGTATTAAGAAAATGAATTGAAATTTAAATATGGAATGGTTATATTGTTGATTGAAAATTAAGATATTTTTGTTTTTTAATTTAATAATTCATGCACCCAATGGTTAAATAATGATTTCTGAAAATTAGCCTTAATTGATGCAAGGATTTCCCCAGACTCAGGTACCTGACTGTAGTCTAGTTCTCGTGGTGTAGATTGGGAATAGGCCCGCACTAGTGCGTTCAGCAGGCTGAGGGGAGGTGATGGGGGTGAGGGCTCTGGCTGAAGGGGACTCTTTGGTTTAGACGGCAAGCGACCTCTCCTCCCCTTCAAGTTGTCTGTGCGCACCACTGTGTCAAACACACAAACAAACAAACAAACAAACACACACACAGTTTAGACAATGAACACAGTTAAAACATCTAAATAATATTATAAATGAATACTATTCAAATCATATAATGCAATTCCACAAATAATGACAATGTATTTGAACACTTGTGAGCATTTTTATGTTGCTAAATTATACTTCATATTCATTATGCCAATCCAGCAATTTGCCCTGTGTATTTTACACGTCTGTTTAGCAGTTTTTAACAAAACTTCAGAAGTTTCTCTCCATCTTTTTCTATGCCTCTCAGCAATGCTTGACTGACCAGTAGGGGGCAGTTGAAAGCTGCACGATTGCAGGTCTTGGAGGGAACTGGGTAAGCGAACGTGAGATATAAGAACAATGTATGTCTGTCCTAATCACCGGCCGAGGTGGATAAGATGATCTAAGGTGTGATCTTTTTAAATCACATGGTATTCATGCTTAAATTCTACAAGAATTAAATTTCCCCATGAACACATGTGCTTGTGACTGTCCTGTGTGTTGTGTTATTACCGGTTCTGAAGCTGCTGATATGCTGTGATTGCAGAGGCGAAGCACTGCCGGTAAACACCTCCATTATAGTTTAATTCATGCATTCATTCTAACCAACCAAACCAGCTACGCGCCGAATCTGTATTAATCCACGCCGCTTCTTGAGTGTAGTGTGTGCATCTGCAGGTTTTAAGTCATTAAGATAAAGAGTGTCTATCTCCTTTGCATCAGTCTCTAACCAGAGGTCCAGCCGAGGTCATATGCACCGGGGCCTATTGTGTGATAATTGGTTTGAGTGGCTTGGCCAGACACATATTATAGGTGTGTGTGTATGTGTGTGTGTCTGTGTTTGATACCTTCTTTCACCATGCCTACACTGAGACACTTCTGGAAGCGGCAGTACTGGCAGCGATTTCTTCTCCTTTTGTCCACAGGGCAGTTTTTACTGGCCAAACACACGTACTTCGCATTCTTCTGCACCGTCCTCTTTAAAAAAGCCTTTGCAGCCCTCACAGGTACGCACTCCATAGTGCTGACAGGCTGCGTTGTCTCCGCACACCGCACAGGTACCCTCTCCGGAGCTGGTGCGACTGGGCGGCGATGGCAAACTCTCTCCCAGGAGCGGTGGGCACGGGCCCATGCCCAGAGAGCGGAACGCCAGGCCTCCCGGCTTACCCATGTTCAGTGGGTACATGTGTGAGTGCGTATGGGAGTGCACATGTGAGTGTGTGTGCGTGTCCAGGCTGGGTGGCACATGTGAAGATGAAGAGGAGGACGACGGAGAACGTTCAGGGCGCAGCGGAAGGCCGATTGCAGTGTCGTAGCCGCTGGTGGATGGTGGGGCTGTCTGCTCGTAGAAATGAGGGAAGCGAGGGCTCTTCAGTGGGCCTTCAATCAAGCAGGGCTGGGGCACAGGGGGAAGACTGTGTTCATCCCACAAGAAAGAGCTGCTGGGTGGCCCGGGGTGAAGCGGCGTGGGGGGTGTTGAAGGGGGCGACTGCTTAAAGTACATGGAGCTTCCAGCTATTGCTTCGTCGGATGGTGCCATGGGTGGGAAAGACTCCTCCTCCTTCTTGATGATAGGGCGTTGAGGAGGGAGTTGATACAGACAAGAGGGTTTCGGCTCAAAGCCGCCCTCCACAAACACATTAAAACTGGGCAGGGAAGTAGTGGCGGCTGCTGCCGAGATTTCCCCCCCACCGAGCTCACACTTCGTGTAGTCTGTCGCCATGAGGTCAGCACTGTAGTCACCATGGTAACCAAAGGACTGGGCGGAGTAGCTGGACCCATGAGGTGCAGGGCCGTACTGGGCCTGAACGCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU160955 True 2834 TUCP 0.46 2 6788627 6796707

Neighbor

gene id symbol gene type direction distance location
CI01000027_06701868_06705228 ALG2 coding downstream 82833 6701849 ~ 6705794 (-)
CI01000027_06678265_06682654 FRRS1L coding downstream 103644 6678167 ~ 6684983 (-)
CI01000027_06655667_06675750 NA coding downstream 112362 6655583 ~ 6676265 (-)
CI01000027_06536391_06539967 INO80C coding downstream 248388 6536340 ~ 6540239 (-)
CI01000027_06522009_06523565 PDP1 coding downstream 264827 6521545 ~ 6523800 (-)
CI01000027_06804551_06805066 NA coding upstream 7665 6804372 ~ 6805066 (-)
CI01000027_06819011_06819234 NA coding upstream 22179 6818886 ~ 6819234 (-)
CI01000027_06832316_06840375 ERP44 coding upstream 35386 6832093 ~ 6840375 (-)
CI01000027_06882644_06900902 TEX10 coding upstream 85848 6882555 ~ 6901317 (-)
CI01000027_06913276_06914858 NA coding upstream 116337 6913044 ~ 6914858 (-)
G142104 NA non-coding downstream 76700 6711711 ~ 6711927 (-)
G142102 NA non-coding downstream 77633 6710699 ~ 6710994 (-)
G142101 NA non-coding downstream 93314 6695114 ~ 6695313 (-)
G142098 NA non-coding downstream 100054 6688039 ~ 6688573 (-)
G142096 NA non-coding downstream 102818 6685591 ~ 6685809 (-)
G142119 NA non-coding upstream 31625 6828332 ~ 6828640 (-)
G142133 NA non-coding upstream 121061 6917768 ~ 6919018 (-)
G142144 NA non-coding upstream 236366 7033073 ~ 7033955 (-)
G142145 NA non-coding upstream 237335 7034042 ~ 7034848 (-)
G142146 NA non-coding upstream 238401 7035108 ~ 7035774 (-)
CI01000027_05447458_05450346 PON2, PON3.2, PON3.1 other downstream 1338264 5447424 ~ 5450461 (-)
G141588 NA other downstream 1587472 5108335 ~ 5201155 (-)
G141728 NA other downstream 1910861 4877067 ~ 4877766 (-)
G141488 NA other downstream 2279656 4507475 ~ 4508971 (-)
G141481 NA other downstream 2375817 4372247 ~ 4412810 (-)
G142203 NA other upstream 344387 7141094 ~ 7143063 (-)
G142209 NA other upstream 356916 7153623 ~ 7157998 (-)
G142299 NA other upstream 642471 7439178 ~ 7440191 (-)
G143267 NA other upstream 872622 7669329 ~ 7673769 (-)
G143325 NA other upstream 1087828 7884535 ~ 7886049 (-)

Expression


Co-expression Network