G141211


Basic Information

Item Value
gene id G141211
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 6879005 ~ 6879349 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU160465
CTTATATAGTGATGGCCGATTTCAAATCACTGCTTCAGGAAGCTTCGGAACGTTATTCATAACANNNNNNNGAATCAGCGGTTTGGAGCGCCAAAGTCACGTGATTTCAGCAGTTTGGCAGTTTGACACGCGATCTGAATCATAATTCGACACGCTGATTCATAACGCTCCGAAGTTTCATGAAGCAGTGTTTTGAAATCAGCCATCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU160465 True 209 lncRNA 0.42 2 6879005 6879349

Neighbor

gene id symbol gene type direction distance location
CI01000027_06859191_06877582 NA coding upstream 1380 6859191 ~ 6877625 (+)
CI01000027_06811768_06817052 NA coding upstream 61842 6811094 ~ 6817163 (+)
CI01000027_06785671_06803146 NR4A3 coding upstream 75792 6785671 ~ 6803213 (+)
CI01000027_06706050_06708485 NA coding upstream 170492 6705983 ~ 6708513 (+)
CI01000027_06604099_06652019 GALNT1 coding upstream 226817 6604099 ~ 6652188 (+)
CI01000027_06906104_06909909 NA coding downstream 26755 6906104 ~ 6910164 (+)
CI01000027_06915303_06927001 TMEM67 coding downstream 35954 6915303 ~ 6927308 (+)
CI01000027_06947553_06950983 NA coding downstream 66912 6946261 ~ 6950983 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L coding downstream 71783 6951132 ~ 6957767 (+)
CI01000027_07055665_07057014 NA coding downstream 175768 7055117 ~ 7057254 (+)
G141209 NA non-coding upstream 7787 6870981 ~ 6871218 (+)
G141198 NA non-coding upstream 98523 6779685 ~ 6780482 (+)
G141197 NA non-coding upstream 100509 6778215 ~ 6778496 (+)
G141187 NA non-coding upstream 114449 6764348 ~ 6764556 (+)
G141183 NA non-coding upstream 123142 6755577 ~ 6755863 (+)
G141089 NA non-coding downstream 33147 6912496 ~ 6915184 (+)
G141220 NA non-coding downstream 92767 6972116 ~ 6972331 (+)
G141221 NA non-coding downstream 93911 6973260 ~ 6973484 (+)
G141096 NA non-coding downstream 99374 6978723 ~ 6980471 (+)
G141110 NA non-coding downstream 308180 7187529 ~ 7191167 (+)
G141052 NA other upstream 607405 6271367 ~ 6271600 (+)
G140924 NA other upstream 913679 5963206 ~ 5965326 (+)
CI01000027_05757143_05758496 NA other upstream 1120135 5756982 ~ 5758881 (+)
G140862 NA other upstream 1158240 5712612 ~ 5712702 (+)
G141082 NA other downstream 19062 6898411 ~ 6900923 (+)
CI01000027_07469157_07471720 NA other downstream 589395 7468964 ~ 7471999 (+)
CI01000027_07947743_07951397 NA other downstream 1071354 7947657 ~ 7951942 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other downstream 1147048 8025788 ~ 8032041 (+)

Expression


Co-expression Network