Gene
RNA
| Item | Value |
|---|---|
| gene id | G141110 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000027 |
| NCBI id | null |
| chromosome length | 10680226 |
| location | 7187529 ~ 7191167 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU160354 | True | 3639 | lncRNA | 0.35 | 1 | 7187529 | 7191167 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000027_07142789_07157141 | NA | coding | upstream | 29542 | 7142315 ~ 7157987 (+) |
| CI01000027_07055665_07057014 | NA | coding | upstream | 130275 | 7055117 ~ 7057254 (+) |
| CI01000027_06951132_06956691 | GLIPR2, GLIPR2L | coding | upstream | 230687 | 6951132 ~ 6957767 (+) |
| CI01000027_06947553_06950983 | NA | coding | upstream | 236546 | 6946261 ~ 6950983 (+) |
| CI01000027_06915303_06927001 | TMEM67 | coding | upstream | 260221 | 6915303 ~ 6927308 (+) |
| CI01000027_07216718_07225808 | NA | coding | downstream | 24601 | 7215768 ~ 7226571 (+) |
| CI01000027_07292677_07331000 | FAM188A | coding | downstream | 101510 | 7292677 ~ 7331032 (+) |
| CI01000027_07375781_07378401 | ITGA8 | coding | downstream | 184614 | 7375781 ~ 7378421 (+) |
| CI01000027_07432479_07451012 | FAM171A1 | coding | downstream | 241312 | 7432479 ~ 7452012 (+) |
| CI01000027_07455850_07459062 | NMT2, NMT1 | coding | downstream | 264683 | 7455850 ~ 7459062 (+) |
| G141096 | NA | non-coding | upstream | 207058 | 6978723 ~ 6980471 (+) |
| G141221 | NA | non-coding | upstream | 214045 | 6973260 ~ 6973484 (+) |
| G141220 | NA | non-coding | upstream | 215198 | 6972116 ~ 6972331 (+) |
| G141089 | NA | non-coding | upstream | 272345 | 6912496 ~ 6915184 (+) |
| G141211 | NA | non-coding | upstream | 308180 | 6879005 ~ 6879349 (+) |
| G141254 | NA | non-coding | downstream | 2258 | 7193425 ~ 7193627 (+) |
| G141255 | NA | non-coding | downstream | 4108 | 7195275 ~ 7195494 (+) |
| G141321 | NA | non-coding | downstream | 114517 | 7305684 ~ 7329095 (+) |
| G141354 | NA | non-coding | downstream | 142255 | 7333422 ~ 7333632 (+) |
| G141355 | NA | non-coding | downstream | 142742 | 7333909 ~ 7334137 (+) |
| G141082 | NA | other | upstream | 286606 | 6898411 ~ 6900923 (+) |
| CI01000027_06706050_06708485 | NA | other | upstream | 476897 | 6705983 ~ 6708513 (+) |
| G141052 | NA | other | upstream | 915929 | 6271367 ~ 6271600 (+) |
| G140924 | NA | other | upstream | 1222203 | 5963206 ~ 5965326 (+) |
| CI01000027_07469157_07471720 | NA | other | downstream | 277577 | 7468964 ~ 7471999 (+) |
| CI01000027_07947743_07951397 | NA | other | downstream | 759536 | 7947657 ~ 7951942 (+) |
| CI01000027_08026500_08029412 | ENSAB, ENSA | other | downstream | 835230 | 8025788 ~ 8032041 (+) |
| CI01000027_08255251_08264629 | NA | other | downstream | 1067170 | 8255073 ~ 8264897 (+) |
| G143033 | NA | other | downstream | 2537648 | 9728815 ~ 9729551 (+) |
