XLOC_008605 (BX000438.1)


Basic Information

Item Value
gene id XLOC_008605
gene name BX000438.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 30896722 ~ 30910178 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017188
AGCAGAGCTGATCATTTAGGAAAAGAGCTAAAACTGCTCAACTAGTTAAAAAACAGCCAGTTAAAGTAACTTCATCCATTAAAAACCATAAAGATCAAAACCGTTAAGTTATCAGAGTCACAAATATGGCTCTCCTTCCAGCCAAGTGTCTGACAATGACGTCCATTGAGCGTAATGACTAACAGTTGCCCATATAATAGGAGCAACTGCCCTGCTGGCTAAACTATTGTCTGTCTGTGCACAAACGTACAAATTGGGCATTTGTGCACAACACTTAGGATAATAGATGTTGGGTAGAAGAGCTAGTCAGCCTGGATAAGATCACAAGAGGAATGATTGAGGAACACAAGAGCCAGAAACACTTTAAGCGGTCAAGATTATCTCAGCTAAAGAACGCCTAAATATCTTCAAGCGTGGGGAACAGGAAACAATTGTGTTCGGTTTTGCAATACATCAAGTCTCGTCAGTTCAGGTGGTCGTTCTTCATTTTCCAGCGCTCCAGAGCAGTCCCTAAGAAAGGCTATATATCATTTTAATCTCAAAAGAGGGTGACAATGCAGACCACAGAAAATCTGACGTACAACTCCACCACTTCCCAATATGCCGACCTCAACATTTCTTTTATGACCACTAGTTTTCCACCAACTGGTGCCTCCGAGATCAACTGTTTTATTGATGCCCAGCTAGCATTTATAGCAACTGCCACAGCTGGCGGCATCATCCTGATCCTCCTAACCTCCACCATAGCACTGGCATGTACCGTCTCAAGTCAGAAACGCCACCAGCGGACGCCCCGTCCATCCAGAAGCAACGCAGACCTTGTGAGTGGAACAGGCTATTGGGGGACAGAGAACAGTGAGGGCGGCATCGTGGGTCCATGTGAAACCAGCGTTTTACTGGAGGAAGTAAAAACCGATGGCGAGGAAGAAGAGGGCAATGATGGCGCGGCAGGTTCGAGCCAGTATATCCACCCTTCTAACACATCCAGAGAGACAGAGAGCATCCCAACAACAATGCAAAGCTCACCATCCAGGGATTCCTGCATAGATCCCATCGGTTTGGAGAATATGCCTCTGATGGTGTgaattttaaaagcttttttgtaTGCTAGCCACTGAAGGCAGgtttgattattataatttttttttttttttttttttaataaacggcTTCAACAGAATATAAAAAAGTAAGCTAACAGAAGAGCACATTTAAAAGTGGCCTTACATGATTTTTGGGAATTGTTTAACCAACTACAATTATCTGTTCATTAGGATAAAAAGAACAATTATGAAAttgattaatttgttaatttgtcaTGAAATGAGGGCAGTTTTCACATCTCAATCAGCTCAAAATATCTTAGTGAAGATGACAACGACaatacaaaaatgaaatttctgtgTATGATTGTAATTGCGATCAAAAGGGAGTCTAACATTAGCATCGTCTcaaatgtttgcttttttttttttgtgaaaaactgATTATGCCTCGAAACTGAAAAAAAGTATGTTCATTTGCTCTAGATCACAAATACAAGCCCTATTTATCTCATTTTTAATGTCATAAGCTGTAGAAGACTTCCGAATCTTTGGCCGCTGAATGAACATGATGAGAAAAATCAAGCAC

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0007601 visual perception biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0006811 ion transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0050806 positive regulation of synaptic transmission biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0097060 synaptic membrane cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0098878 neurotransmitter receptor complex cellular_component
GO:0045202 synapse cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0017146 NMDA selective glutamate receptor complex cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0044297 cell body cellular_component
GO:0008328 ionotropic glutamate receptor complex cellular_component
GO:0098793 presynapse cellular_component
GO:0022843 voltage-gated cation channel activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015293 symporter activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0004972 NMDA glutamate receptor activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097767

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017188 True 1632 lncRNA 0.41 3 30896722 30910178

Neighbor

gene id symbol gene type direction distance location
XLOC_008604 BX000438.3 coding upstream 3367 30893237 ~ 30893355 (+)
XLOC_008603 NA coding upstream 22232 30861762 ~ 30874490 (+)
XLOC_008602 NA coding upstream 315895 30580518 ~ 30580827 (+)
XLOC_008601 BX649247.1 coding upstream 442156 30454452 ~ 30454566 (+)
XLOC_008600 NA coding upstream 516403 30358431 ~ 30380319 (+)
XLOC_008606 omgb coding downstream 7104 30917282 ~ 30921559 (+)
XLOC_008607 BX000438.2 coding downstream 12748 30922926 ~ 30924032 (+)
XLOC_008608 pimr135 coding downstream 103400 31013578 ~ 31018413 (+)
XLOC_008609 NA coding downstream 272562 31182740 ~ 31187391 (+)
XLOC_008610 si:ch211-244e12.7 coding downstream 366691 31276869 ~ 31277691 (+)
XLOC_008463 BX663520.1 misc upstream 9644440 21252191 ~ 21252282 (+)
XLOC_008620 NA non-coding downstream 537407 31447585 ~ 31457948 (+)
XLOC_008623 NA non-coding downstream 560182 31470360 ~ 31470945 (+)
XLOC_008624 NA non-coding downstream 560918 31471096 ~ 31476599 (+)

Expression


Co-expression Network