G142320


Basic Information

Item Value
gene id G142320
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 7448773 ~ 7453604 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU161718
TTGATTTGTTTTTTGGCTTTATTGGGATAATAATAGGCCTGAATTATAATACAAGCAACCAGTCCAGACATTCAAAGTAGTCTGCCGAAGAGCCGAGTGACACAAGGATACTTACCAAGTGGTTACCCCGGCAACATATCAGACCTTCAACAGCTTTTAAATAACATCGCTTTCAGTCCTACATCAGTACATACACACACCGCATAGTATGTCTACAGCAGACACACAGATATACCGAGCAACAAACGCTCACATGAGCATAAACAACTGGGTGAATGAATATGTACATACATACAAGAAAAAAGAGAGAGCAGATTCATAAAATGCACTGAACATACAGTGGGATACAACAGTCTGAGACTACTAGTGAAAATGATTGAACAAACATTTTTTGTTTTTTTAATAATAATAATAATAATAATAAAAAATCATATTTATGACAAATACTGTCAGTATAACAATTTGAGTAAAAAAGAATTTGGTGCATCCCCTTTTTGCTTCAATAAAAGCAGCACTCGAGTTGCATAAACACATTTGCATATTTGATTAGTGACCTATATCGAATTGTAAACACATCAACTACTTACTGGTTTAGTTTGTCAAAATCTTAAATTAGATTCTGAATCCCAGATTTTCAGCGTGGTCTCAGACTTTTGGACCCCACAGTATATCCAAATCCAACATTAAAACACTTAACACGCATACAATGAGATCAAAGGGGGTGCAATATATTGTGAAAAACATCAAATTATATGAATAAACTGATAATGGTTTAGAGGAAAAGGACATCTAATGATGGATATAAATGATTACTAGAAAGGCACTTAAGACAAAAACGACAGTTTGGGAAAGAAAAGCTGGTGGCTGTTTATGTGAGTGAGTGTGTCTGAATCCAGTCTAAATGTGCCGTCCACTGCACTCACACACTAAGGCAAGTCCAAAACAAAATAATTATAACAATACAACATACATTGAAATTAAAATACAGTGGTTAAAATAAAAAAAGGCATCTAAAGCTATATGATCCTTCAGTTTAAAGCAATGCATAGTGTTTTGTTTTCTTTTACAGGTGGGTCTGCTTGTCTGAAGTCCACTAGCAATGTTGGCAAAAGTCCTACTGTTTATGCTAGAGTCGCAAGAAATTGAAAATCACATTTGAAAATCTGCGTTCAACACCAAAGCCAAAATGACTGATTAACAGGAACAAATGGTGCATTATGTAAACTTATTTGGTTTCACAAAGCTTCAGCTGTATTCTACTCATGAATGCATGATACCAATAAAACTAAAAATAGGTGAGATTTAGATTGTAGATCCCATTATAGTGGTTTTATGTGTTTTAACCCATTAAGATGTGGAAGACATTCCACCGGTCATCCCATAAAATGTTCAAAAATAAGTGCTGGGAAACACTTAGTGGTATAGTTGCAGTGTACACATGTTGCCACTAGATGTCATATTGCTCAAAAACAGCAGCATCTCATAAAGCTTAAACAACATTTCACCTTCAATACAATGGCTTGCGATATTTTTTGCTGAAAGTGTATGTCTGGAAAGCCATAGCATTTGTGCATTAGATTGGTGGTATTTAATGGTGTTTTTTTGCTTGGAAACTTCTGTTCTTCCTCATTCAGTCGTGAGGCAGAGCAGCTCCAATAATTATTTGTGCTATGGCTTTTTTGGCTTTCACTGCCACAGGCAAATAGCCACGCACAGACCTGCGCTCATAAGGCAACTCCATTCAACAGTCCAGCAAGGGACCACAGGGGAAGCACTTAAAGGAACAGTTCGCCCAGAAAAATTAAACTTCGGTCATTTACTCACCCTCACAACATTTCAAACCTGTATGACTTTTCATGTTCCGCAGGAGAAAGTACAATATTTTGAAGAATGTTTCATCTGTTCTCACTGACTTTCACTGTATGGACAATCAGACATTTAAAGAATTAGTTCACTTTCAAATGAAAATTACCCCGAGCTTTACTCACCCTCAAGCCATCCTAGGTGTATATGACTTTCTTCTTTCAGACAAATACAATCGGAGTTATATTAAATAATATCCTGGCTCTTCCAAGGTTTATAATGGCGGTGAATAGAGGATGAGATTTTGAAGCCCAAAAAAGTGCAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU161718 True 2129 lncRNA 0.36 2 7448773 7453604

Neighbor

gene id symbol gene type direction distance location
CI01000027_07291684_07291971 NA coding downstream 156802 7290753 ~ 7291971 (-)
CI01000027_07280569_07290167 NA coding downstream 158283 7280215 ~ 7290490 (-)
CI01000027_07190301_07196617 NA coding downstream 251771 7190071 ~ 7197002 (-)
CI01000027_07022724_07029894 STEAP4 coding downstream 418745 7022108 ~ 7030028 (-)
CI01000027_06975907_06983141 NA coding downstream 465090 6975907 ~ 6983683 (-)
CI01000027_07462193_07463023 NA coding upstream 8326 7461930 ~ 7463215 (-)
CI01000027_07473568_07489464 ABCB1, ABCB4 coding upstream 19295 7472899 ~ 7489775 (-)
CI01000027_07495449_07517906 ADAM15 coding upstream 41845 7495449 ~ 7517906 (-)
CI01000027_07520072_07528984 DCST1 coding upstream 65881 7519485 ~ 7528984 (-)
CI01000027_07564783_07576342 NA coding upstream 110988 7564592 ~ 7576800 (-)
G142254 NA non-coding downstream 63282 7360940 ~ 7385491 (-)
G142248 NA non-coding downstream 94535 7335871 ~ 7354238 (-)
G142182 NA non-coding downstream 119678 7326018 ~ 7329095 (-)
G142230 NA non-coding downstream 147068 7295372 ~ 7301705 (-)
G142223 NA non-coding downstream 266241 7182307 ~ 7182532 (-)
G142307 NA non-coding upstream 85867 7539471 ~ 7542955 (-)
G143304 NA non-coding upstream 321799 7775403 ~ 7775628 (-)
G143334 NA non-coding upstream 340104 7793708 ~ 7798644 (-)
G143341 NA non-coding upstream 350711 7804315 ~ 7804766 (-)
G143371 NA non-coding upstream 491244 7944848 ~ 7945079 (-)
G142299 NA other downstream 8582 7439178 ~ 7440191 (-)
G142209 NA other downstream 290775 7153623 ~ 7157998 (-)
G142203 NA other downstream 305710 7141094 ~ 7143063 (-)
G141638 NA other downstream 652066 6788627 ~ 6796707 (-)
CI01000027_05447458_05450346 PON2, PON3.2, PON3.1 other downstream 1998410 5447424 ~ 5450461 (-)
G143267 NA other upstream 215725 7669329 ~ 7673769 (-)
G143325 NA other upstream 430931 7884535 ~ 7886049 (-)
G144365 NA other upstream 3085176 10538780 ~ 10542148 (-)

Expression


Co-expression Network