G141330


Basic Information

Item Value
gene id G141330
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 7502066 ~ 7514879 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU160603
ATATTTTTGTTGAAATCCGATGACTCAGTGCCATAGCCAGCAATGACATTTCCTCTCTCAAGATCCAATAATGTACTAAAAACATATTTAAATCAGTTCACGTGAGTACAGTGGTTCAATATTACTATTTTAAAGCGAAGAGAATATTTTTGGTGCGCCAAAAAAACAAAATAATGACTTAACATAGTGATAGCCGATGGTCTTACGGGTGTGGAAAGGCATGAGGGTGAATAATAAATGACATTATTTTCATTTTTGGGTGAACTAACCCTTTAAGACCACTTTTTTGATACTGTTTTGTTGCTTTTATGTCCTTTTTGAAGCTTGAATCCATCAGTCCCCATGGAGACTAATTGCATTAAATGAGCCTTTTGTGTTCTTCAGAAGAAACAAAGTCACAGTAAATCATTACAGAATTTCCTTCTTCTTCTTTTTTTTGGTGAACTATCCCTTTAACCACTCCTTCCCTGAATACTCATATCTGCTTCTCTATTTCCCCTCTTTCCTCTTTTTCCCTCTATTCTGTTATTGCCTTCTGCTCCGCCCTGTCTTTTTCTCCATTTCTTTATAAGCGTCTCTTTCTGTCTGAGGTAATGTCCCTGAGCACATGCAGTATGCAGTGCGATGACCTCAGCAGCAGATGAATGCTGGGTGGGGTATTTTTACTGAGGCTAGCTGAGGGTGAAGAAAAAAAGAGTGAGTAAGGGAAGGGGAGCATGGGTGGAGGATGAGGATTGTGCCAAATCTCATGGTTTGCCTGAGCCTTAACTGCTAATATAGGTATTATTATTATTAATTTCTAGAAATTTCTAGAATTATTCTAATAATAAGTGTGATAATTTAATCGATTAATTCTTTATTTTTGTACAATTCCACTGACAAAACATTTATGTGTATCTTCAACTACAGTATTAGTTCTTGGTTCATGGAGTCACACATGATAAAATGAAAGATGTGTGGTTGAGTGAGTCAGATTAATTGTGAAACTGATACAACTGATTCATAAGTGTTGGTGATTCGCTAAAAAGAACTGCCTCATAAGAGTCAGAATTCACTGGTCACGCTGTATATTTTATGAGTACCAATTCATAAGATTTATTCGTGCAGGAATTGGACTTCACTTATCCCACCAGTTTTTTGTTTTTTTGGCTTACTAAAAGGTGCAATGTGTAAATTTTAGCGGAATCTAGCGGTGAGGTTGCGAACTGCAACCAACAGAACTCACCCCTCTCTTTCAGAGAAGCTACGGTGGCCATTTGGCCAACACAAAGATGTCCTTGTCTGAAGCCCGGAACATATCAAGCTGACGGTTGGCCGTCGACTGACTAAGTTTTCTCAGTGTGTTCCGCACCGTCGGCTGAAGTTGGTCCTTGTCGACTTTTTTTCGGCCGATTTGACATGTTGAATCGGCATCGGAGCTTGTCGGTTAGTCGGGCCATCTAATCTTTCTGATTGGCTGTTCAGCTACTGCCACTTGCTGGTACGGAAAGGCATTTCTTCTTACGCAGGCACAGAACGGACGTGCTACTTGGCCGTCGGGTGTTGAGCGTCGGTTTGGTGTGTCAGGGCAACTTTGGACCCAGACACTGCCGATGTGAGCCAACCCCGCAGTCTGCTTTTGTCGCCACTAGTTCGTCTGCGTTGGCTTGGTGTGTTCTGGGCTTGAGACAGCAGGGAGTACATTAGCCAGTCAAGCAATGAGGTTTCTTCTTACTTCTAACAAAGAACGGTCTCTGCTTCTAATAAACCAGACGACTACTACTACTACTATTACTACTACTACTACCACTACTACTTCATGCGTATTCAACATAGTGACGATGCAAGCTGCCTCTAAAAACATGAACGATTTAGAAGAACAACATAGTGACTAAACACGTTCTGTAGAGCAGTTTGTCTGTTTAGGGCTGCTGTAAAAACATGCTGCCGCAAAATGGCGACTTGACATGGAGGGGGGACCCGCGGTGTATGTAGATAAAAATGACTCCTTCTAAGGTGATAAAAACATAACGGTTCATTATGTAAGGTCTTTATACACCACTGGAAACATAGTTATGTATATTATATTGCATTTCTGTCAATAGTTCCTCCCAAATTTTACACATTGCACCTTTAAAGAAAGGGCTGAAATAAAAGTAATTTTCTTAAAAATCAGCCTTCACTGGTAGCACTGTATGTTTCACACTACAAAGTAGTGCAGAGAACACTTTCAGAGACACTTTCGATCATTTTGTATCATTAAATTTTTAAATGAACCTGGGTCCTAACCTTAGTAGCCACCATATTTAATTGTGTGTGAATGTAAATAAAGCTGTGGCATATGACTACACATATAAACTGTATTAAAATGTGCTATTAGAGATGGAATGGCACTCAAAAAATATCACACTGTATACATTGTTAGTTTGAAACAACACTCTCTCTAATTGCTGTACTAATATGGATGAGTTCCAGTTAGTGGGTGGTGGATGGTTTGAGGACACTGATTAAAATCAACAGACTGTATTCATTGGTACACACACACATGAAAATGCACACACGCCCAAGCCATCACCCGCCTTTCCTCTCGATGGCAAAACATGCTAAAAACAGACCATCTTTGCCTCGGTTTCTGTGATTCAGCCAGGCACAGACGGGCTGCTTTACTGTGTATGACAAAATAAATGAATCAGCTTGTAACCCAGGGAGCATTTCATATATCACACTGTTGAGAGAAGTGACAAAGAGAATGAAACAAATTATGTGAGAGTGAATGAGTAATTAAAGATTAGGAGAGGGATGTGGGTTTGGTGTCCGTATCTGTCCTGTCCTGGAGGGAGAATGTAGGTGTGTTGACATATTCAGTTGGAAACTTCCTGACATAAGGTATGATCTGAGAGGAGAGGAACTAGAGGCAACATTATGGGGACGGACACTTCCTGTGCAGCTGAGAGCAACTGAAGTCATGTCCTGCTGAATTCCCCCACTCTTCAGTCCACACACACACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU160603 True 2987 lncRNA 0.41 3 7502066 7514879

Neighbor

gene id symbol gene type direction distance location
CI01000027_07469157_07471720 NA coding upstream 30067 7468964 ~ 7471999 (+)
CI01000027_07455850_07459062 NMT2, NMT1 coding upstream 43004 7455850 ~ 7459062 (+)
CI01000027_07432479_07451012 FAM171A1 coding upstream 50054 7432479 ~ 7452012 (+)
CI01000027_07375781_07378401 ITGA8 coding upstream 123645 7375781 ~ 7378421 (+)
CI01000027_07292677_07331000 FAM188A coding upstream 171034 7292677 ~ 7331032 (+)
CI01000027_07529488_07537870 DCST2 coding downstream 14609 7529488 ~ 7539111 (+)
CI01000027_07541256_07541975 NA coding downstream 26377 7541256 ~ 7542152 (+)
CI01000027_07545610_07559939 NA coding downstream 30731 7545610 ~ 7560158 (+)
CI01000027_07561011_07562818 NA coding downstream 46012 7560891 ~ 7563845 (+)
CI01000027_07605090_07608785 NA coding downstream 89981 7604860 ~ 7609540 (+)
G141364 NA non-coding upstream 579 7501157 ~ 7501487 (+)
G141355 NA non-coding upstream 167929 7333909 ~ 7334137 (+)
G141354 NA non-coding upstream 168434 7333422 ~ 7333632 (+)
G141321 NA non-coding upstream 172971 7305684 ~ 7329095 (+)
G141255 NA non-coding upstream 306572 7195275 ~ 7195494 (+)
G141378 NA non-coding downstream 14920 7529799 ~ 7530002 (+)
G141380 NA non-coding downstream 21238 7536117 ~ 7536333 (+)
G142360 NA non-coding downstream 202241 7717120 ~ 7722230 (+)
CI01000027_07789066_07797594 NA non-coding downstream 269895 7784774 ~ 7800723 (+)
G142446 NA non-coding downstream 289663 7804542 ~ 7804806 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other upstream 544299 6951132 ~ 6957767 (+)
G141082 NA other upstream 601143 6898411 ~ 6900923 (+)
CI01000027_06706050_06708485 NA other upstream 791434 6705983 ~ 6708513 (+)
G141052 NA other upstream 1230466 6271367 ~ 6271600 (+)
CI01000027_07947743_07951397 NA other downstream 435824 7947657 ~ 7951942 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other downstream 511518 8025788 ~ 8032041 (+)
CI01000027_08255251_08264629 NA other downstream 743458 8255073 ~ 8264897 (+)
G143033 NA other downstream 2213936 9728815 ~ 9729551 (+)

Expression


Co-expression Network