XLOC_008607 (BX000438.2)


Basic Information

Item Value
gene id XLOC_008607
gene name BX000438.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 30922926 ~ 30924032 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017190
ATCCTTTCAACCTTCACGAGAACTGAGAGACACAACGATCAGCCATGGCGGAAGCGAAAGCCCTGAATATGGCTTCCAAAACTCAATTTCTACTGCTGCTAGTGGCTGTGATGATTACAAGCTACAATGCTGTTGGTGGCATCGACACGGCTACATACGAACCACTCAACTGCACAACCAAATGCATAACCAATGGAACATTCAACTGCACAAACAACTGCACAGCAAATGGAACATTCAACTGCACAAACAACTGCACAGACAATGGAATAGCCGCCTGCTTAGCCAACTGCATGGTCAATGTAACAGTCAACTGCACAAACAACTGCACAGCCAATGGAACAATCACCTGCACAGTCAATGGCTTAAATTTAATATACAACTGCACtcctggcatcaacaacatgaccAGCAGCAACATCACCATCAACAGCACAACCAACAACGGCACAACCAACAACAGCACAACCAACAACAGCACAACCAACAACAGCACAACCAACAACAGCACAAGCTGGACAACTCCGAGCTCAAACCATGGCAACTCTATTGCTCCTTCCTTTTCACTTGTGGGAATCATGGGTCTGTCTGGACTACTACTTTTCTATGCAACCGACATAAATGATATTTTCACTAATCTACACATGCTAGTGGCTAGGGACAAGTATTCGTATGTAATTATTAAATGAGGCATGCATGACTCCTATGAAATGAACCGCATATTACCATTTATTGACATTCTACAGTGACTCATGAAAGAAACTCACTGCTGCTATGTTGTCGCTTGCGGTGATCATGGGACTGTCTGGACTACTTTTCTGCTCAATTTGACATTGGTGATATTATTACTAATCTACAGATGTTaatggttaaaaactggtatttttatgtaattaataaatgAGGCATGTATGGGCCATCTTAAATGACCTTCA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0090257 regulation of muscle system process biological_process
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0007275 multicellular organism development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0048856 anatomical structure development biological_process
GO:0045214 sarcomere organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0036379 myofilament cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005861 troponin complex cellular_component
GO:0005577 fibrinogen complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0016528 sarcoplasm cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005615 extracellular space cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000098011

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017190 True 935 lncRNA 0.42 2 30922926 30924032

Neighbor

gene id symbol gene type direction distance location
XLOC_008606 omgb coding upstream 1367 30917282 ~ 30921559 (+)
XLOC_008605 BX000438.1 coding upstream 12748 30896722 ~ 30910178 (+)
XLOC_008604 BX000438.3 coding upstream 29571 30893237 ~ 30893355 (+)
XLOC_008603 NA coding upstream 48436 30861762 ~ 30874490 (+)
XLOC_008602 NA coding upstream 342099 30580518 ~ 30580827 (+)
XLOC_008608 pimr135 coding downstream 89546 31013578 ~ 31018413 (+)
XLOC_008609 NA coding downstream 258708 31182740 ~ 31187391 (+)
XLOC_008610 si:ch211-244e12.7 coding downstream 352837 31276869 ~ 31277691 (+)
XLOC_008611 or116-1 coding downstream 372485 31296517 ~ 31298174 (+)
XLOC_008612 or116-2 coding downstream 379323 31303355 ~ 31305451 (+)
XLOC_008463 BX663520.1 misc upstream 9670644 21252191 ~ 21252282 (+)
XLOC_008601 BX649247.1 non-coding upstream 468360 30454452 ~ 30454566 (+)
XLOC_008620 NA non-coding downstream 523553 31447585 ~ 31457948 (+)
XLOC_008623 NA non-coding downstream 546328 31470360 ~ 31470945 (+)
XLOC_008624 NA non-coding downstream 547064 31471096 ~ 31476599 (+)
XLOC_008627 AL929092.2 non-coding downstream 555625 31479657 ~ 31480566 (+)

Expression


Co-expression Network