Gene
RNA
| Item | Value |
|---|---|
| gene id | G142467 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000027 |
| NCBI id | null |
| chromosome length | 10680226 |
| location | 7846622 ~ 7853206 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU161889 | True | 1214 | lncRNA | 0.39 | 2 | 7846622 | 7853206 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000027_07789066_07797594 | NA | coding | upstream | 49022 | 7784774 ~ 7800723 (+) |
| CI01000027_07695223_07701346 | NA | coding | upstream | 144799 | 7695046 ~ 7701823 (+) |
| CI01000027_07686575_07690215 | GPATCH4 | coding | upstream | 156275 | 7686575 ~ 7690347 (+) |
| CI01000027_07666350_07684399 | GON4L | coding | upstream | 162162 | 7666350 ~ 7684460 (+) |
| CI01000027_07634015_07663101 | NPR1B, NPR1 | coding | upstream | 183212 | 7633964 ~ 7663410 (+) |
| CI01000027_07932282_07935282 | NA | coding | downstream | 78721 | 7931927 ~ 7935342 (+) |
| CI01000027_07947743_07951397 | NA | coding | downstream | 94537 | 7947657 ~ 7951942 (+) |
| CI01000027_07954714_07957187 | NA | coding | downstream | 101508 | 7954714 ~ 7957449 (+) |
| CI01000027_07962587_07964571 | NA | coding | downstream | 109381 | 7962587 ~ 7964605 (+) |
| CI01000027_07973865_07979402 | NA | coding | downstream | 120489 | 7973695 ~ 7979463 (+) |
| G142452 | NA | non-coding | upstream | 18555 | 7813660 ~ 7828067 (+) |
| G142446 | NA | non-coding | upstream | 41816 | 7804542 ~ 7804806 (+) |
| G142360 | NA | non-coding | upstream | 124392 | 7717120 ~ 7722230 (+) |
| G141380 | NA | non-coding | upstream | 310289 | 7536117 ~ 7536333 (+) |
| G142475 | NA | non-coding | downstream | 6041 | 7859247 ~ 7860616 (+) |
| G142466 | NA | non-coding | downstream | 55365 | 7908571 ~ 7919981 (+) |
| G142526 | NA | non-coding | downstream | 62118 | 7915324 ~ 7915643 (+) |
| G142491 | NA | non-coding | downstream | 94451 | 7948341 ~ 7948477 (+) |
| CI01000027_07469157_07471720 | NA | other | upstream | 374908 | 7468964 ~ 7471999 (+) |
| CI01000027_06951132_06956691 | GLIPR2, GLIPR2L | other | upstream | 888855 | 6951132 ~ 6957767 (+) |
| G141082 | NA | other | upstream | 945699 | 6898411 ~ 6900923 (+) |
| CI01000027_06706050_06708485 | NA | other | upstream | 1135990 | 6705983 ~ 6708513 (+) |
| G141052 | NA | other | upstream | 1575022 | 6271367 ~ 6271600 (+) |
| CI01000027_08026500_08029412 | ENSAB, ENSA | other | downstream | 173191 | 8025788 ~ 8032041 (+) |
| CI01000027_08255251_08264629 | NA | other | downstream | 405131 | 8255073 ~ 8264897 (+) |
| G143033 | NA | other | downstream | 1875609 | 9728815 ~ 9729551 (+) |
