G143316


Basic Information

Item Value
gene id G143316
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 7950704 ~ 7985293 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU162838
CAAAACTTCCCTTCTGAATTTCAAATATTTCACAAAACAGTTTCGACAGGTTGACAGGATTAAAAACAAGACATCTAAGACACAAGAGAAAAATACACTCAAAATTAACAGTTTATTTAATATGGTCATAAAAAGCCCTTGGTAATTTATATAATCAAAATATAAAACAGAGATCTCAGATCCCACCAGGGGAGAAAAAACTTAACAGACTGTGTACACAATATCAAAACTTCCCTTCTGAATTTCAAATATTGCACAAAACAGTTTCGACTGCATGAGTTGACAGGATTAAAAACAAGACATCTAAGACACAAGAGAAAAATACACTCAACCTTGTGGTATTAAAATTAATTGCCTCTTTTAGAGAGTGTTTTCCCGAACATTATTACATGATGGAGCACAATGATAGTGATGAGTCCCTTTTGTTATTGGTCAGCAGCAGACTGAAGTTTGGTCTCTTGTGAGCTCCCTGCTTCCAGCTCTCACATGACTGGGAAACTGGCCAGGCTGGCAATGCCACATGCATTGTTACGGTTACGAGCCATCAGGACATACCCCTTCTTTCCCCAGTCTTCACCCCAACTTCTGTTCTTCACAATCCAGTACTTTTTGCCTTTCGGTGTGACTCCGTAACCAACAGCTAGCACTGCATGGTTGACATCATCTTTGTTGCAGTTGGGATCATAGTACACACCTAGAAATGGGTTTTGGACATAGTACAGGTCAAGCTTTTAGTCTTATTAGTGATCTTTATTATAAAGATTTCAGCAAAACAACACAAAACAGACAATGTAGATGTAGAAGAGATGTTAAGTACCGCTTTTATAGTACAGGAAGGTGGACTGCATGGCATCTATACCCACTGACACAGGTCCCACCTTTGCCACGGCAGCAGTCAGAGCCCTCTCATTACCCTGAGGAATCTCTTTATACCCTTTGCAACTGGCCGCTCTCGCTGAAATGTTGTAGGCACACTGCTGATCCTGC
>TU162839
CCTTTGGTAATTTATATAATCAAAATATAAAACAGAGATCTCAGATCCCACCAGGGGAAAAAAACTTAACAGACTGTGTACACAATATCAAAACTTCCCTTCTGAATTTCAAATATTGCACAAAACAGTTTCGACTGCATGAGTTGACAGGATTAAAAACAAGACATCTAAGACACAAGAGAAAAATACACTCAACCTTGTGGTATTAAAATTAATTGCCTCTTTTAGAGAGTGTTTTCCCGAACATTATTACATGATGGAGCACAATGATAGTGATGAGTCCCTTTTGTTATTGGTCAGCAGCAGACTGAAGTTTGGTCTCTTGTGAGCTCCCTGCTTCCAGCTCTCACATGACTGGGAAACTGGCCAGGCTGGCAATGCCACATGCATTGTTACGGTTACGAGCCATCAGGACATACCCCTTCTTTCCCCAGTCTTCACCCCAACTTTCTTCACAATCCAGTACTTTTTGCCTTTCGGTGTGACTCCGTAACCAACAGCTAGCACTGCATGGTTGACATCATCTTTGTTGCAGTTGGGATCATAGTACACACCTAGAAATGGGTTTTGGACATAGTACAGGTCAAGCTTTTAGTCTTATTAGTGATCTTTATTATAAAGATTTCAGCAAAACAACACAAAACAGACAATGTAGATGTAGAAGAGATGTTAAGTACCGCTTTTATAGTACAGGAAGGTGGACTGCATGGCATCTATACCCACTGACACAGGTCCCACCTTTGCCACGGCAGCAGTCAGAGCCCTCTCATTACCCTGAGGAATCTCTTTATACCCTTTGCAACTGGCCGCTCTCGCTGAAATGTTGTAGGCACACTGCTGATCCTGC
>TU162840
CCTTTGGTAATTTATATAATCAAAATATAAAACAGAGATCTCAGATCCCACCAGGGGAGAAAAAACTTAACAGACTGTGTACACAATATCAAAACTTCCCTTCTGAATTTCAAATATTGCACAAAACAGTTTCGACTGCATGAGTTGACAGGATTAAAAACAAGACATCTAAGACACAAGAGAAAAATACACTCAACCTTGTGGTATTAAAATTAATTGCCTCTTTTAGAGAGTGTTTTCCCGAACATTATTACATGATGGAGCACAATGATAGTGATGAGTCCCTTTTGTTATTGGTCAGCAGCAGACTGAAGTTTGGTCTCTTGTGAGCTCCCTGCTTCCAGCTCTCACATGACTGGGAAACTGGCCAGGCTGGCAATGCCACATGCATTGTTACGGTTACGAGCCATCAGGACATACCCCTTCTTTCCCCAGTCTTCACCCCAACTTCTGTTCTTCACAATCCAGTACTTTTTGCCTTTCGGTGTGACTCCGTAACCAACAGCTAGCACTGCATGGTTGACATCATCTTTGTTGCAGTTGGGATCATAGTACACACCTAGAAATGGGTTTTGGACATAGTACAGGTCAAGCTTTTAGTCTTATTAGTGATCTTTATTATAAAGATTTCAGCAAAACAACACAAAACAGACAATGTAGATGTAGAAGAGATGTTAAGTACCGCTTTTATAGTACAGGAAGGTGGACTGCATGGCATCTATACCCACTGACACAGGTCCCACCTTTGCCACGGCAGCAGTCAGAGCCCTCTCATTACCCTGAGGAATCTCTTTATACCCTTTGCAACTGGCCGCTCTCGCTGAAATGTTGTAGGCACACTGCTGATCCTGC
>TU162836
CAAAACTTCCCTTCTGAATTTCAAATATTTCACAAAACAGTTTATTTAATATGGTCATAAAAAGCCCTTGGTAATTTATATAATCAAAATATAAAACAGAGATCTCAGATCCCACCAGGGGAGAAAAAACTTAACAGACTGTGTACACAATATCAAAACTTCCCTTCTGAATTTCAAATATTGCACAAAACAGTTTCGACTGCATGAGTTGACAGGATTAAAAACAAGACATCTAAGACACAAGAGAAAAATACACTCAACCTTGTGGTATTAAAATTAATTGCCTCTTTTAGAGAGTGTTTTCCCGAACATTATTACATGATGGAGCACAATGATAGTGATGAGTCCCTTTTGTTATTGGTCAGCAGCAGACTGAAGTTTGGTCTCTTGTGAGCTCCCTGCTTCCAGCTCTCACATGACTGGGAAACTGGCCAGGCTGGCAATGCCACATGCATTGTTACGGTTACGAGCCATCAGGACATACCCCTTCTTTCCCCAGTCTTCACCCCAACTTCAGAAGCAGAAAAAAAATGGTGGATTAGGAGAAGACACTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162838 False 987 lncRNA 0.40 3 7950704 7985188
TU162839 False 847 lncRNA 0.42 3 7950704 7985293
TU162840 False 852 lncRNA 0.42 3 7950704 7985293
TU162836 True 554 lncRNA 0.39 2 7951255 7985188

Neighbor

gene id symbol gene type direction distance location
CI01000027_07924688_07926502 LINGO4B coding downstream 24202 7924130 ~ 7926502 (-)
CI01000027_07904624_07919811 NA coding downstream 30893 7904624 ~ 7919811 (-)
CI01000027_07888504_07893711 TLR18 coding downstream 56993 7888504 ~ 7893711 (-)
CI01000027_07876459_07878548 NA coding downstream 72156 7875493 ~ 7878548 (-)
CI01000027_07850115_07861432 BCAN coding downstream 89272 7849703 ~ 7861432 (-)
CI01000027_07993673_08002214 ONECUTL coding upstream 8042 7993335 ~ 8006263 (-)
CI01000027_08016916_08025375 NA coding upstream 31236 8016529 ~ 8025455 (-)
CI01000027_08073979_08077754 SCNM1 coding upstream 88368 8073661 ~ 8077754 (-)
CI01000027_08081583_08083496 TNFAIP8L2B, TNFAIP8L2 coding upstream 95976 8081269 ~ 8083496 (-)
CI01000027_08091338_08097220 NA coding upstream 106000 8091293 ~ 8097220 (-)
G143372 NA non-coding downstream 4183 7946278 ~ 7946521 (-)
G143371 NA non-coding downstream 5625 7944848 ~ 7945079 (-)
G143341 NA non-coding downstream 145938 7804315 ~ 7804766 (-)
G143334 NA non-coding downstream 152060 7793708 ~ 7798644 (-)
G143304 NA non-coding downstream 175076 7775403 ~ 7775628 (-)
G143383 NA non-coding upstream 34858 8020151 ~ 8021259 (-)
G143385 NA non-coding upstream 37461 8022754 ~ 8022982 (-)
G143314 NA non-coding upstream 47688 8032981 ~ 8033981 (-)
G143389 NA non-coding upstream 67218 8052511 ~ 8052858 (-)
G143325 NA other downstream 64655 7884535 ~ 7886049 (-)
G143267 NA other downstream 276935 7669329 ~ 7673769 (-)
G142299 NA other downstream 510513 7439178 ~ 7440191 (-)
G142209 NA other downstream 792706 7153623 ~ 7157998 (-)
G142203 NA other downstream 807641 7141094 ~ 7143063 (-)
G144365 NA other upstream 2553487 10538780 ~ 10542148 (-)

Expression


Co-expression Network