G143314


Basic Information

Item Value
gene id G143314
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 8032981 ~ 8033981 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU162834
ATTATTGTGGTTAAAACTCACCCATGCTTTGTTTTTGAGCAGCCAGTCCCGCTGGGCTGTGAGAAGATAGGAGGAGATCTCTTCCCCCACCAGAGTCACACACTTGCTAAGTCCTCTGTCATTCTGATGCTTGCACACAATTGCCCCAAAAGTCAGCAAGCTGGCAATTCGCCCCCAGTTTGTGATGCCATCGCTGAAGATTTCTGTTGCCAGAGTCTTGATGAAACTCACATCTTCTCCATTCTGCTCCAGATTCAGACGTGCAATCATACCTGAGAGAGTCATATGTTAGAGGGCACTGCGGAGCCATAAATATGGTAATACGTGGCATAAAGTGGAGCAACCTGCCAGGCCAGCAAGGGACGTGTAAGCATCTACTTCCTCGATATCCGACCCAGGCGAGGATGGTACCGAGCCTTGGAGACCGTCCCCTGTAAACTGGTTCTGGGGTTTCCGCTCTGGCATTACCAGTCTCTTGCCACCAAACCCGCCAGAACTGTTGACGTTAAGAGCTGTTAATCCAATGCATGGCCAAAAGGCGTTGTCGTTTGAAACTTTACTTCCAGGGAACATTTTTGCAAATTCACATCAATGCCTTTAATCCAGTATATCGACGATGCATTTGAGAGGAAACGTCGCCTTTCTAATTTTAAACTAACTCAAATCAACTACATTGTATGTTGTCTAGGCAGAAGCGTAGAACGAGAACTGTCTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162834 True 716 lncRNA 0.47 2 8032981 8033981

Neighbor

gene id symbol gene type direction distance location
CI01000027_08016916_08025375 NA coding downstream 7526 8016529 ~ 8025455 (-)
CI01000027_07993673_08002214 ONECUTL coding downstream 29316 7993335 ~ 8006263 (-)
CI01000027_07924688_07926502 LINGO4B coding downstream 106479 7924130 ~ 7926502 (-)
CI01000027_07904624_07919811 NA coding downstream 113170 7904624 ~ 7919811 (-)
CI01000027_07888504_07893711 TLR18 coding downstream 139270 7888504 ~ 7893711 (-)
CI01000027_08073979_08077754 SCNM1 coding upstream 39680 8073661 ~ 8077754 (-)
CI01000027_08081583_08083496 TNFAIP8L2B, TNFAIP8L2 coding upstream 47288 8081269 ~ 8083496 (-)
CI01000027_08091338_08097220 NA coding upstream 57312 8091293 ~ 8097220 (-)
CI01000027_08134523_08134951 NA coding upstream 100506 8134487 ~ 8135309 (-)
CI01000027_08285855_08291534 NA coding upstream 251788 8285769 ~ 8292823 (-)
G143385 NA non-coding downstream 9999 8022754 ~ 8022982 (-)
G143383 NA non-coding downstream 11722 8020151 ~ 8021259 (-)
G143316 NA non-coding downstream 47688 7950704 ~ 7985293 (-)
G143320 NA non-coding downstream 68201 7956068 ~ 7964780 (-)
G143389 NA non-coding upstream 18530 8052511 ~ 8052858 (-)
G143393 NA non-coding upstream 56021 8090002 ~ 8090731 (-)
G143395 NA non-coding upstream 59336 8093317 ~ 8093593 (-)
G143403 NA non-coding upstream 81858 8115839 ~ 8117546 (-)
G143422 NA non-coding upstream 136605 8170586 ~ 8170812 (-)
G143325 NA other downstream 146932 7884535 ~ 7886049 (-)
G143267 NA other downstream 359212 7669329 ~ 7673769 (-)
G142299 NA other downstream 592790 7439178 ~ 7440191 (-)
G142209 NA other downstream 874983 7153623 ~ 7157998 (-)
G142203 NA other downstream 889918 7141094 ~ 7143063 (-)
G144365 NA other upstream 2504799 10538780 ~ 10542148 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010013 mcl1b coding NC_007127.7 CM002900.2 29586004 ~ 29587969 (+)
striped catfish (Pangasianodon hypophthalmus) G142157 NA non-coding NC_047603.1 CM018549.1 1903163 ~ 1904434 (+)
tiger barb (Puntius tetrazona) G113898 mcl1b,LOC107741748,LOC107587828,LOC107689846,LOC107663357,LOC107597989,LOC107732475 non-coding NC_056714.1 CM032083.1 17791645 ~ 17850432 (-)
mexican tetra (Astyanax mexicanus) G124573 ddt unknown NC_035910.1 CM008313.1 25431743 ~ 25434885 (+)