Gene
RNA
| Item | Value |
|---|---|
| gene id | G143395 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000027 |
| NCBI id | null |
| chromosome length | 10680226 |
| location | 8093317 ~ 8093593 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU162922 | True | 277 | lncRNA | 0.29 | 1 | 8093317 | 8093593 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000027_08081583_08083496 | TNFAIP8L2B, TNFAIP8L2 | coding | downstream | 9821 | 8081269 ~ 8083496 (-) |
| CI01000027_08073979_08077754 | SCNM1 | coding | downstream | 15563 | 8073661 ~ 8077754 (-) |
| CI01000027_08016916_08025375 | NA | coding | downstream | 67862 | 8016529 ~ 8025455 (-) |
| CI01000027_07993673_08002214 | ONECUTL | coding | downstream | 89652 | 7993335 ~ 8006263 (-) |
| CI01000027_07924688_07926502 | LINGO4B | coding | downstream | 166815 | 7924130 ~ 7926502 (-) |
| CI01000027_08134523_08134951 | NA | coding | upstream | 40894 | 8134487 ~ 8135309 (-) |
| CI01000027_08285855_08291534 | NA | coding | upstream | 192176 | 8285769 ~ 8292823 (-) |
| CI01000027_08422679_08426771 | CCT3, TCPG, CCT3.L | coding | upstream | 329086 | 8422679 ~ 8426771 (-) |
| CI01000027_08429132_08434558 | NA | coding | upstream | 334719 | 8428312 ~ 8436258 (-) |
| CI01000027_08443968_08446252 | NA | coding | upstream | 349584 | 8443177 ~ 8446436 (-) |
| G143393 | NA | non-coding | downstream | 2586 | 8090002 ~ 8090731 (-) |
| G143389 | NA | non-coding | downstream | 40459 | 8052511 ~ 8052858 (-) |
| G143314 | NA | non-coding | downstream | 59336 | 8032981 ~ 8033981 (-) |
| G143385 | NA | non-coding | downstream | 70335 | 8022754 ~ 8022982 (-) |
| G143383 | NA | non-coding | downstream | 72058 | 8020151 ~ 8021259 (-) |
| G143403 | NA | non-coding | upstream | 22246 | 8115839 ~ 8117546 (-) |
| G143422 | NA | non-coding | upstream | 76993 | 8170586 ~ 8170812 (-) |
| G143502 | NA | non-coding | upstream | 134558 | 8228151 ~ 8228372 (-) |
| G143504 | NA | non-coding | upstream | 139592 | 8233185 ~ 8233388 (-) |
| G143476 | NA | non-coding | upstream | 183675 | 8277268 ~ 8319468 (-) |
| G143325 | NA | other | downstream | 207268 | 7884535 ~ 7886049 (-) |
| G143267 | NA | other | downstream | 419548 | 7669329 ~ 7673769 (-) |
| G142299 | NA | other | downstream | 653126 | 7439178 ~ 7440191 (-) |
| G142209 | NA | other | downstream | 935319 | 7153623 ~ 7157998 (-) |
| G142203 | NA | other | downstream | 950254 | 7141094 ~ 7143063 (-) |
| G144365 | NA | other | upstream | 2445187 | 10538780 ~ 10542148 (-) |
