Gene
RNA
| Item | Value |
|---|---|
| gene id | G143603 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000027 |
| NCBI id | null |
| chromosome length | 10680226 |
| location | 8661587 ~ 8661806 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU163138 | True | 220 | lncRNA | 0.41 | 1 | 8661587 | 8661806 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000027_08595524_08646502 | NA | coding | downstream | 15085 | 8594938 ~ 8646502 (-) |
| CI01000027_08568349_08570750 | NA | coding | downstream | 90837 | 8567985 ~ 8570750 (-) |
| CI01000027_08537911_08550747 | LDLRAD4B | coding | downstream | 110129 | 8536827 ~ 8551458 (-) |
| CI01000027_08514843_08515829 | MC5RB, MC5R, MC5RA | coding | downstream | 143246 | 8514488 ~ 8518341 (-) |
| CI01000027_08483034_08503082 | LMNA | coding | downstream | 158505 | 8482939 ~ 8503082 (-) |
| CI01000027_08671118_08685781 | NA | coding | upstream | 9289 | 8671095 ~ 8685781 (-) |
| CI01000027_08688706_08696073 | SLC45A4 | coding | upstream | 26885 | 8688691 ~ 8697369 (-) |
| CI01000027_08701843_08702938 | NA | coding | upstream | 38976 | 8700782 ~ 8702938 (-) |
| CI01000027_08713799_08734144 | DGAT1B | coding | upstream | 51748 | 8713554 ~ 8734144 (-) |
| CI01000027_08820113_08821952 | SCRT1A, SCRT2, SCRT1, SCRT1B | coding | upstream | 158213 | 8820019 ~ 8822352 (-) |
| G143602 | NA | non-coding | downstream | 366 | 8660958 ~ 8661221 (-) |
| G143601 | NA | non-coding | downstream | 1074 | 8660060 ~ 8660513 (-) |
| G143598 | NA | non-coding | downstream | 3907 | 8657309 ~ 8657680 (-) |
| G143597 | NA | non-coding | downstream | 6099 | 8655180 ~ 8655488 (-) |
| G143479 | NA | non-coding | downstream | 71267 | 8578428 ~ 8590320 (-) |
| G143608 | NA | non-coding | upstream | 22299 | 8684105 ~ 8684426 (-) |
| G143615 | NA | non-coding | upstream | 47321 | 8709127 ~ 8709529 (-) |
| G143467 | NA | non-coding | upstream | 49997 | 8711803 ~ 8713014 (-) |
| G143622 | NA | non-coding | upstream | 76808 | 8738614 ~ 8738830 (-) |
| G143623 | NA | non-coding | upstream | 77041 | 8738847 ~ 8739070 (-) |
| G143325 | NA | other | downstream | 775538 | 7884535 ~ 7886049 (-) |
| G143267 | NA | other | downstream | 987818 | 7669329 ~ 7673769 (-) |
| G142299 | NA | other | downstream | 1221396 | 7439178 ~ 7440191 (-) |
| G142209 | NA | other | downstream | 1503589 | 7153623 ~ 7157998 (-) |
| G142203 | NA | other | downstream | 1518524 | 7141094 ~ 7143063 (-) |
| G144365 | NA | other | upstream | 1876974 | 10538780 ~ 10542148 (-) |
