Gene
RNA
| Item | Value |
|---|---|
| gene id | G143622 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000027 |
| NCBI id | null |
| chromosome length | 10680226 |
| location | 8738614 ~ 8738830 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: synaptopodin isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU163157 | True | 217 | lncRNA | 0.39 | 1 | 8738614 | 8738830 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000027_08713799_08734144 | DGAT1B | coding | downstream | 4470 | 8713554 ~ 8734144 (-) |
| CI01000027_08701843_08702938 | NA | coding | downstream | 35676 | 8700782 ~ 8702938 (-) |
| CI01000027_08688706_08696073 | SLC45A4 | coding | downstream | 41245 | 8688691 ~ 8697369 (-) |
| CI01000027_08671118_08685781 | NA | coding | downstream | 52833 | 8671095 ~ 8685781 (-) |
| CI01000027_08595524_08646502 | NA | coding | downstream | 92112 | 8594938 ~ 8646502 (-) |
| CI01000027_08820113_08821952 | SCRT1A, SCRT2, SCRT1, SCRT1B | coding | upstream | 81189 | 8820019 ~ 8822352 (-) |
| CI01000027_08864430_08897266 | MROH1 | coding | upstream | 125438 | 8864268 ~ 8897266 (-) |
| CI01000027_08940113_08943539 | NA | coding | upstream | 201036 | 8939866 ~ 8943539 (-) |
| CI01000027_08946941_08955434 | CSK21, CSNK2A1.S, CSNK2A1 | coding | upstream | 206483 | 8945313 ~ 8955434 (-) |
| CI01000027_08959339_08969831 | PTP4A3, PTP4A3.L, MGC131305 | coding | upstream | 219252 | 8958082 ~ 8969831 (-) |
| G143467 | NA | non-coding | downstream | 25600 | 8711803 ~ 8713014 (-) |
| G143615 | NA | non-coding | downstream | 29085 | 8709127 ~ 8709529 (-) |
| G143608 | NA | non-coding | downstream | 54188 | 8684105 ~ 8684426 (-) |
| G143603 | NA | non-coding | downstream | 76808 | 8661587 ~ 8661806 (-) |
| G143602 | NA | non-coding | downstream | 77393 | 8660958 ~ 8661221 (-) |
| G143623 | NA | non-coding | upstream | 17 | 8738847 ~ 8739070 (-) |
| G143636 | NA | non-coding | upstream | 25647 | 8764477 ~ 8764696 (-) |
| G143652 | NA | non-coding | upstream | 45581 | 8784411 ~ 8784631 (-) |
| G143660 | NA | non-coding | upstream | 53159 | 8791989 ~ 8792712 (-) |
| G143749 | NA | non-coding | upstream | 191570 | 8930400 ~ 8935626 (-) |
| G143325 | NA | other | downstream | 852565 | 7884535 ~ 7886049 (-) |
| G143267 | NA | other | downstream | 1064845 | 7669329 ~ 7673769 (-) |
| G142299 | NA | other | downstream | 1298423 | 7439178 ~ 7440191 (-) |
| G142209 | NA | other | downstream | 1580616 | 7153623 ~ 7157998 (-) |
| G142203 | NA | other | downstream | 1595551 | 7141094 ~ 7143063 (-) |
| G144365 | NA | other | upstream | 1799950 | 10538780 ~ 10542148 (-) |
