Gene
RNA
| Item | Value |
|---|---|
| gene id | G143004 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000027 |
| NCBI id | null |
| chromosome length | 10680226 |
| location | 9423411 ~ 9424600 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU162478 | True | 1190 | lncRNA | 0.35 | 1 | 9423411 | 9424600 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000027_09414743_09422093 | SPHK2 | coding | upstream | 932 | 9412872 ~ 9422479 (+) |
| CI01000027_09398846_09400911 | NA | coding | upstream | 22170 | 9398846 ~ 9401795 (+) |
| CI01000027_09392689_09396015 | PRPF31, PRPF31.S | coding | upstream | 27396 | 9392689 ~ 9396015 (+) |
| CI01000027_09376781_09390767 | LMTK3 | coding | upstream | 32288 | 9376781 ~ 9391123 (+) |
| CI01000027_09369991_09372314 | NA | coding | upstream | 50104 | 9369991 ~ 9373307 (+) |
| CI01000027_09424746_09432978 | NA | coding | downstream | 146 | 9424746 ~ 9433471 (+) |
| CI01000027_09448387_09455263 | NA | coding | downstream | 22447 | 9447047 ~ 9455293 (+) |
| CI01000027_09459448_09462994 | NA | coding | downstream | 34848 | 9459448 ~ 9463100 (+) |
| CI01000027_09484034_09501412 | KLHL32 | coding | downstream | 59434 | 9484034 ~ 9502255 (+) |
| CI01000027_09562530_09572606 | NA | coding | downstream | 137896 | 9562496 ~ 9572635 (+) |
| G143031 | NA | non-coding | upstream | 263 | 9422922 ~ 9423148 (+) |
| G143009 | NA | non-coding | upstream | 17382 | 9404744 ~ 9406029 (+) |
| G143050 | NA | non-coding | upstream | 89532 | 9332701 ~ 9333879 (+) |
| G143045 | NA | non-coding | upstream | 117251 | 9305954 ~ 9306160 (+) |
| G143060 | NA | non-coding | downstream | 43223 | 9467823 ~ 9468042 (+) |
| G143062 | NA | non-coding | downstream | 46569 | 9471169 ~ 9472939 (+) |
| G143064 | NA | non-coding | downstream | 49581 | 9474181 ~ 9474690 (+) |
| G143061 | NA | non-coding | downstream | 50409 | 9475009 ~ 9475610 (+) |
| G143066 | NA | non-coding | downstream | 51791 | 9476391 ~ 9478186 (+) |
| CI01000027_08255251_08264629 | NA | other | upstream | 1162585 | 8255073 ~ 8264897 (+) |
| CI01000027_08026500_08029412 | ENSAB, ENSA | other | upstream | 1391370 | 8025788 ~ 8032041 (+) |
| CI01000027_07947743_07951397 | NA | other | upstream | 1471469 | 7947657 ~ 7951942 (+) |
| CI01000027_07469157_07471720 | NA | other | upstream | 1951697 | 7468964 ~ 7471999 (+) |
| CI01000027_06951132_06956691 | GLIPR2, GLIPR2L | other | upstream | 2465644 | 6951132 ~ 6957767 (+) |
| G143033 | NA | other | downstream | 304215 | 9728815 ~ 9729551 (+) |
