G143062


Basic Information

Item Value
gene id G143062
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 9471169 ~ 9472939 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU162537
TGTACATGCACCATTCACTTCTAAACACAAGCAAAACATTTTATGTTTATTTGTCTGTCTGGTACGTGCGTTTGTCATAGTTCCCATGAATATGAGCTCTCATTTATAGTTCTGTTTAGTGAATGATTCATTCATTTTTTGGGGCCAAACCCACAACTTTAATTGATCTATATCAGGTTTTGTTAGTACAACTTTTGTATTATTATTTTCAGGTTGTTTTTTTTTTTGCTATTATTTGAAAGTGAAGAGAGACAGGACTGTGCAGGGCTATGGCTCTGACTCAACTTCCATTTTAATGTCATTAGTTATTAGGCTATGTTTTGTTACTTCTAAGCAGTAACTTTTTGCACACTTAAACTTAAACTGCCATACATTGAATAACACATTAAGTTAATGTTGTTGTTGTTATTATTATTTTTATTTTTGCCAAATTGTTTTTTGCACCCCATTGACTATTAAACTGAGTATATGTACTTCTCTTTCACAACAGTACAGGAAATAAACACCACAAACATGCTGAAAACCACCACCTTACCATGTCTAATAATTTTGATATTCTATAGTAACTGGTCCTGTTTATGCTTTTCGAAAAGCTGTGCTAACAGAAACTTGTTTTGATCACAGGGTCCCTATTCGGAGCTGATATGTGGGTTAAAATGACTAAAGAAATGTGTGTCGGGGACTCTAAATGTGGTTTCCTGTTTGTCAAAACTTCTACTTAAAACCAGCAGAGGAAATAAGCATTGTGGTTTACATGTTGTTGGATAGCAGGCAATACAATGATATCATTGTACATTTTAATCAGTATTGTGCAACTGGAAAATTAAATATCAATACTACATATACAAGAGGTTGTCATGCATTAAATCAAACACACTGCCTTATAATGATTTGGTGAAAAAGATTATTGAGAGGCATAAGAGAGCTCTTGATTCACAGAGGGCCTATGACAAATGTAAAACCAGAAATGCAACATTCAAACAATATGCAAACTGCATGTTGTTATTGAAAACACCACAGACACTGTCAGTATCTCTAGGGCCTGAGACCTGTGTTTGATCATTGACATAAAAATGTTACAAAACATTTGCAATTTGAATTGCGTCATGACCACTTCCTCAGTAGACAAATCAAAGCTTCCAAAAAACCTTTCAGTTAGTTTATTTTCAATACAGGTTGTAGCTACCAAACAAAAATCTAATTCTGCTTAGATTCACAGTAGCTTTTGCTTTTCATATTCTAGGCTATTCAGTTACCAGTCCATGCAGCTTTGTGCTTCTAAGCCATCTCTATGCCGTCTTCCCCCTCTAGAACAGGACGCTTCTCAGGGCTGTAGTCCCGATCTGTGCGCTCCACATATCTCTGCAACGTGCTGTAGTATTGTTCACTTTGTCTAAAGGTGTATACAGCAGAGATCTCCTCCCAGGCCTTATTTTCTGGAAAGTTAACTGAAGGTAGCTTACTTGAGAGCGGCAGTTCTTAAAGCAAGTCCCGATCAGCGCTACTATTGCTGATATGATAATAATGGACCAGCCGAGTATCTGCGAACATAGATCAATCAGTTGAATGTTACAAAAATATATATAAGTTATTGTTGTAAATTATTACACAGCTCTCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162537 True 1620 lncRNA 0.36 3 9471169 9472939

Neighbor

gene id symbol gene type direction distance location
CI01000027_09459448_09462994 NA coding upstream 8069 9459448 ~ 9463100 (+)
CI01000027_09448387_09455263 NA coding upstream 15876 9447047 ~ 9455293 (+)
CI01000027_09424746_09432978 NA coding upstream 37698 9424746 ~ 9433471 (+)
CI01000027_09414743_09422093 SPHK2 coding upstream 48690 9412872 ~ 9422479 (+)
CI01000027_09398846_09400911 NA coding upstream 69928 9398846 ~ 9401795 (+)
CI01000027_09484034_09501412 KLHL32 coding downstream 11095 9484034 ~ 9502255 (+)
CI01000027_09562530_09572606 NA coding downstream 89557 9562496 ~ 9572635 (+)
CI01000027_09661837_09663114 POU3F2B, POU3F2 coding downstream 188584 9661523 ~ 9663857 (+)
CI01000027_09767653_09768743 NA coding downstream 294714 9767653 ~ 9769402 (+)
CI01000027_09774092_09779035 NA coding downstream 301053 9773992 ~ 9779129 (+)
G143060 NA non-coding upstream 3127 9467823 ~ 9468042 (+)
G143004 NA non-coding upstream 46569 9423411 ~ 9424600 (+)
G143031 NA non-coding upstream 48021 9422922 ~ 9423148 (+)
G143009 NA non-coding upstream 65140 9404744 ~ 9406029 (+)
G143064 NA non-coding downstream 1242 9474181 ~ 9474690 (+)
G143061 NA non-coding downstream 2070 9475009 ~ 9475610 (+)
G143066 NA non-coding downstream 3452 9476391 ~ 9478186 (+)
G143075 NA non-coding downstream 85183 9558122 ~ 9558380 (+)
G143093 NA non-coding downstream 119806 9592745 ~ 9593407 (+)
CI01000027_08255251_08264629 NA other upstream 1210343 8255073 ~ 8264897 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other upstream 1439128 8025788 ~ 8032041 (+)
CI01000027_07947743_07951397 NA other upstream 1519227 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 1999455 7468964 ~ 7471999 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other upstream 2513402 6951132 ~ 6957767 (+)
G143033 NA other downstream 255876 9728815 ~ 9729551 (+)

Expression


Co-expression Network