G143066


Basic Information

Item Value
gene id G143066
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 9476391 ~ 9478186 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU162544
GGATGTTGTTCATTTACTTACAAAAACACCTTGGTTGAAAATCTGAAAACTTTTATTTATAAAATTATAAAAAATACTTTTTATTTACATGCCACAAACACAAACTTTTTTATTATTCATATGAAAAATTATGTTGAATGACAAAACAAAAATTAAACAATAGTAAAAACCCAGCAATGTTAAAATCATACAATGGCAGTATTCAAAAGAAAAGCTAAAATAGCAAGACTAAAAACAACAATGAATTGACATTGTAAAAGGTACAGAAAATGAAGCAAGGCTATCTTTACAGCTATGTATTCACCCAAATAAAGCATGAAAAGCTGTCAATTAGACAGCATGCACATCTACAGGACCAGTTTGCTCTCGTCCACAAATGCAAGTGCTGCTGGGTTTGAAAAATCATCAGACTTCATTGAAGCCCTCACAGCTGGATTCTCAAGGTCCTCACAAGTGCACACATATTTGTGCAGGATGCTGTAGTATTCATCCATGCTTTGGAACTTATAGAAGGAGGAGATCTTCTTCCAGGCCTGTCTGGGAGGACTTTTCATAGGAATGGGTTTGGTTAACTCAAAGAAACTTGTTATGTTTCTCTTAGCAAGCTTTTCGGCATGCTGAGTTGTATAGCTGTCCAAATACTCACTCTCCTTCTGAGTGTACATCCTCCAAAACCTCAGCTGCATGTAACTGATTGGAGAATAGCATCTAGCCATGCATGTGAGCAGAAAGGTGAACATCATGACAGAAGCTATCAGA
>TU162543
CACAAACACAAACTTTTTTATTATTCATATGAAAAATTATGTTGAATGACAAAACAAAAATTAAACAATAGTAAAAACCCAGCAATGTTAAAATCATACAATGGCAGTATTCAAAAGAAAAGCTAAAATAGCAAGACTAAAAACAACAATGAATTGACATTGTAAAAGGTACAGAAAATGAAGCAAGGCTATCTTTACAGCTATGTATTCACCCAAATAAAGCATGAAAAGCTGTCAATTAGACAGCATGCACATCTACAGGACCAGTTTGCTCTCGTCCACAAATGCAAGTGCTGCTGGGTTTGAAAAATCATCAGACTTCATTGAAGCCCTCACAGCTGGATTCTCAAGGTCCTCACAAGTGCACACATATTTGTGCAGGATGCTGTAGTATTCATCCATGCTTTGGAACTTATAGAAGGAGGAGATCTTCTTCCAGGCCTGTCTGGGAGGACTTTTCATAGGAATGGGTTTGGTTAACTCAAAGAAACTTGTTATGTTTCTCTTAGCAAGCTTTTCGGCATGCTGAGTTGTATAGCTGTCCAAATACTCACTCTCCTTCTGAGTGTACATCCTCCAAAACCTCAGCTGCATGTAACTGATTGGAGAATAGCATCTAGCCATGCATGTGAGCAGAAAGGTGAACATCATGACAGAAGCTATCAGA
>TU162546
CACAAACACAAACTTTTTTATTATTCATATGAAAAATTATGTTGAATGACAAAACAAAAATTAAACAATAGTAAAAACCCAGCAATGTTAAAATCATACAATGGCAGTATTCAAAAGAAAAGCTAAAATAGCAAGACTAAAAACAACAATGAATTGACATTGTAAAAGGTACAGAAAATGAAGCAAGGCTATCTTTACAGCTATGTATTCACCCAAATAAAGCATGAAAAGCTGTCAATTAGACAGCATGCACATCTACAGGACCAGTTTGCTCTCGTCCACAAATGCAAGTGCTGCTGGGTTTGAAAAATCATCAGACTTCATTGAAGCCCTCACAGCTGGATTCTCAAGGTCCTCACAAGTGCACACATATTTGTGCAGGATGCTGTAGTATTCATCCATGCTTTGGAACTTATAGAAGGAGGAGATCTTCTTCCAGGCCTGTCTGGGAGGACTTTTCATAGGAATGGGTTTGGTTAACTCAAAGAAACTTGTTATGTTTCTCTTAGCAAGCTTTTCGGCATGCTGAGTTGTATAGCTGTCCAAATACTCACTCTCCTTCTGAGTGTACATCCTCCAAAACCTCAGCTGCATGTAACTGATTGGAGAATAGCATCTAGCCATGCATGTGAGCAGAAAGGTGAACATCATGACAGAAGCTATCAGAATCCAACCAAGTACCTATATTCCAGAATTAATAAAATTATTATTAGCCCACTGTAAAGAGAGGTAACTAACATCAGATGTGTTGAAGCACAGATATCACAATATAGAAATCATTTTAAGATTA
>TU162542
AGCAATGTTAAAATCATACAATGGCAGTATTCAAAAGAAAAGCTAAAATAGCAAGACTAAAAACAACAATGAATTGACATTGTAAAAGGTACAGAAAATGAAGCAAGGCTATCTTTACAGCTATGTATTCACCCAAATAAAGCATGAAAAGCTGTCAATTAGACAGCATGCACATCTACAGGACCAGTTTGCTCTCGTCCACAAATGCAAGTGCTGCTGGGTTTGAAAAATCATCAGACTTCATTGAAGCCCTCACAGCTGGATTCTCAAGGTCCTCACAAGTGCACACATATTTGTGCAGGATGCTGTAGTATTCATCCATGCTTTGGAACTTATAGAAGGAGGAGATCTTCTTCCAGGCCTGTCTGGGAGGACTTTTCATAGGAATGGGTTTGGTTAACTCAAAGAAACTTGTTATGTTTCTCTTAGCAAGCTTTTCGGCATGCTGAGTTGTATAGCTGTCCAAATACTCACTCTCCTTCTGAGTGTACATCCTCCAAAACCTCAGCTGCATGTAACTGATTGGAGAATAGCATCTAGCCATGCATGTGAGCAGAAAGGTGAACATCATGACAGAAGCTATCAGAATCCAACCAAGTACCTATATTCCAGAATTAATAAAATTATTATTAGCCCACTGTAAAGAGAGGTAACTAACATCAGATGTGTTGAAGCACAGATATCACAATATAGAAATCATTTTAAGATTATTGTAGAGGACCTTATGAACGCAAATAACAAGATCTGTAGGAGAGTGTGTAAAACTGCTAAAATAACCCTTTATTACTAAAAAATGAACAACATTTGGAACCACTCATGAAAAATTCCTTTCAAAACTCGAACCCTCTGAAAGTCAAAGTTTGCAATCAAGTCAAGAGTCGAGACATAAGTAAATTTCTCCAAGTGTTTTTTATTTGTATTTGAGATCTAGGCTAGCCTGTTTGATGATACCTGATTTATTTATTTATTTATTTATTTTTGGACAAAGACTAAAAGGATACTATTACAAAAAAAGTCAGTCTCCACCTGACTTTTCTACCGTCTGCTCACCTGAGACTCTGCGCGTATAATGGACAGAACAGCCGTTCTCTCACTTTGTGGAATTGTAGTTCCTTCACAAGGGAACTTCTCCAACTCTGTCCGACAGTGGGGAGACTTTTCGTTGCAAAGGTGGCTTCTAAAGAGAGTAACGTTGGCGCCAGTCATTGAGCACTCGAAATACACCCCTTTGAGTAGCGCAATTGCGATCCAGCTGAGAGGTGCGACCATTGCAGTCACGGTGATTTGAAGAAAAACACACAAAAAGCCAAATGCGTAATTAAAACGACAAAGTTTCGATTTCCTAAGGCACAGACCTGTGAAAAGTTTCCATGTTTTATTGCTCAACATGTAACTTAGGATGAGCAGTGCAACAGCGGGTACGAGGAGGCAGACGTTTCCATAAATGAAATTCCAATCATTGCAAGGACACTTAAAAGCAAAGACCGAGAAGACGTGCTCGCCACCCGCAGTTAAAAGAGCAATTAATCCGAATCCTAAATTGGTCTGTTGTTTCTGAGTGAAGCTAAGCAAAGGTTTTAACTTATCCATGCCTGCCAGCTGACGACCATGAGCTCTTTGTTCA
>TU162545
AGCAATGTTAAAATCATACAATGGCAGTATTCAAAAGAAAAGCTAAAATAGCAAGACTAAAAACAACAATGAATTGACATTGTAAAAGGTACAGAAAATGAAGCAAGGCTATCTTTACAGCTATGTATTCACCCAAATAAAGCATGAAAAGCTGTCAATTAGACAGCATGCACATCTACAGGACCAGTTTGCTCTCGTCCACAAATGCAAGTGCTGCTGGGTTTGAAAAATCATCAGACTTCATTGAAGCCCTCACAGCTGGATTCTCAAGGTCCTCACAAGTGCACACATATTTGTGCAGGATGCTGTAGTATTCATCCATGCTTTGGAACTTATAGAAGGAGGAGATCTTCTTCCAGGCCTGTCTGGGAGGACTTTTCATAGGAATGGGTTTGGTTAACTCAAAGAAACTTGTTATGTTTCTCTTAGCAAGCTTTTCGGCATGCTGAGTTGTATAGCTGTCCAAATACTCACTCTCCTTCTGAGTGTACATCCTCCAAAACCTCAGCTGCATGTAACTGATTGGAGAATAGCATCTAGCCATGCATGTGAGCAGAAAGGTGAACATCATGACAGAAGCTATCAGA
>TU162541
CTGAGACTCTGCGCGTATAATGGACAGAACAGCCGTTCTCTCACTTTGTGGAATTGTAGTTCCTTCACAAGGGAACTTCTCCAACTCTGTCCGACAGTGGGGAGACTTTTCGTTGCAAAGGTGGCTTCTAAAGAGAGTAACGTTGGCGCCAGTCATTGAGCACTCGAAATACACCCCTTTGAGTAGCGCAATTGCGATCCAGCTGAGAGGTGCGACCATTGCAGTCACGGTGATTTGAAGAAAAACACACAAAAAGCCAAATGCGTAATTAAAACGACAAAGTTTCGATTTCCTAAGGCACAGACCTGTGAAAAGTTTCCATGTTTTATTGCTCAACATGTAACTTAGGATGAGCAGTGCAACAGCGGGTACGAGGAGGCAGACGTTTCCATAAATGAAATTCCAATCATTGCAAGGACACTTAAAAGCAAAGACCGAGAAGACGTGCTCGCCACCCGCAGTTAAAAGAGCAATTAATCCGAATCCTAAATTGGTCTGTTGTTTCTGAGTGAAGCTAAGCAAAGGTTTTAACTTATCCATGCCTGCCAGCTGACGACCATGAGCTCTTTGTTCA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU162544 False 759 lncRNA 0.36 1 9476391 9477149
TU162543 False 667 lncRNA 0.38 1 9476483 9477149
TU162546 False 790 lncRNA 0.37 1 9476483 9477272
TU162542 False 1624 lncRNA 0.40 1 9476563 9478186
TU162545 False 587 lncRNA 0.40 1 9476563 9477149
TU162541 True 574 lncRNA 0.45 1 9477613 9478186

Neighbor

gene id symbol gene type direction distance location
CI01000027_09459448_09462994 NA coding upstream 13291 9459448 ~ 9463100 (+)
CI01000027_09448387_09455263 NA coding upstream 21098 9447047 ~ 9455293 (+)
CI01000027_09424746_09432978 NA coding upstream 42920 9424746 ~ 9433471 (+)
CI01000027_09414743_09422093 SPHK2 coding upstream 53912 9412872 ~ 9422479 (+)
CI01000027_09398846_09400911 NA coding upstream 75150 9398846 ~ 9401795 (+)
CI01000027_09484034_09501412 KLHL32 coding downstream 5848 9484034 ~ 9502255 (+)
CI01000027_09562530_09572606 NA coding downstream 84310 9562496 ~ 9572635 (+)
CI01000027_09661837_09663114 POU3F2B, POU3F2 coding downstream 183337 9661523 ~ 9663857 (+)
CI01000027_09767653_09768743 NA coding downstream 289467 9767653 ~ 9769402 (+)
CI01000027_09774092_09779035 NA coding downstream 295806 9773992 ~ 9779129 (+)
G143061 NA non-coding upstream 781 9475009 ~ 9475610 (+)
G143064 NA non-coding upstream 1701 9474181 ~ 9474690 (+)
G143062 NA non-coding upstream 3452 9471169 ~ 9472939 (+)
G143060 NA non-coding upstream 8349 9467823 ~ 9468042 (+)
G143004 NA non-coding upstream 51791 9423411 ~ 9424600 (+)
G143075 NA non-coding downstream 79936 9558122 ~ 9558380 (+)
G143093 NA non-coding downstream 114559 9592745 ~ 9593407 (+)
G143110 NA non-coding downstream 204340 9682526 ~ 9682767 (+)
G143034 NA non-coding downstream 222818 9701004 ~ 9710260 (+)
G143156 NA non-coding downstream 386445 9864631 ~ 9865105 (+)
CI01000027_08255251_08264629 NA other upstream 1215565 8255073 ~ 8264897 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other upstream 1444350 8025788 ~ 8032041 (+)
CI01000027_07947743_07951397 NA other upstream 1524449 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 2004677 7468964 ~ 7471999 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other upstream 2518624 6951132 ~ 6957767 (+)
G143033 NA other downstream 250629 9728815 ~ 9729551 (+)

Expression


Co-expression Network